staden-lg/README.md

STADEN-LG

STADEN Last Generation

Introduction

This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely.

Build

You should clone this repo and cd to the repo get the $pkgname via pwd

# build easy
for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits
do
cd $pkgname/src/$pkgalone
make
done

# compile x related
cd $pkgname/src/staden
bash gen_a.sh
make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap
cd $pkgname/src/bap
make bap xbap
for pkgalone in vepe update_subclones scf
do
cd $pkgname/src/$pkgalone
make
done

Or you can get this pkg from BioArchLinux repo.

Todo

Following pkgs need your hands.

• nip

• sip

• rep

• lip

• vep

• nipl

• pipl

• sipl

• xnip

• xpip

• xsip

License

• Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License.

• Copyright (c) 2023~ Everyone. GPL License.