2023-04-14 02:56:17 +08:00
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# STADEN-LG
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STADEN Last Generation
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## Introduction
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2023-04-14 03:52:38 +08:00
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<div align="center">
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<img src="./desktop/staden-lg.png" width = "300" alt="logo" align=center />
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</div>
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2023-04-14 03:39:15 +08:00
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2023-04-14 02:56:17 +08:00
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This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely.
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## Build
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You should clone this repo and cd to the repo get the `$pkgname` via `pwd`
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```
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# build easy
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for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits
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do
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cd $pkgname/src/$pkgalone
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make
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done
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# compile x related
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cd $pkgname/src/staden
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bash gen_a.sh
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make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap
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cd $pkgname/src/bap
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make bap xbap
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for pkgalone in vepe update_subclones scf
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do
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cd $pkgname/src/$pkgalone
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make
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done
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```
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Or you can get this pkg from BioArchLinux repo.
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## Todo
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Following pkgs need your hands.
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- [ ] nip
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- [ ] sip
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- [ ] rep
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- [ ] lip
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- [ ] vep
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- [ ] nipl
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- [ ] pipl
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- [ ] sipl
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- [ ] xnip
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- [ ] xpip
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- [ ] xsip
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## License
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- Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License.
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- Copyright (c) 2023~ Everyone. GPL License.
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