48 lines
1.8 KiB
C
48 lines
1.8 KiB
C
#ifndef _contigEditor_h
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#define _contigEditor_h
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#include <X11/Intrinsic.h>
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#include "fort.h"
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extern Widget disagreeWid;
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extern float pcCut; /* cut off used for consensus */
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typedef struct _def_colours {
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Pixel lightGrey;
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} DefColours;
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extern DefColours defColours;
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#define EDITMODE 1
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#define JOINMODE 2
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typedef struct {
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int_f *idevr; /* unit number for relationships */
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int_f *idevw; /* unit number for working versions of sequences */
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int_f *idevn; /* unit number for sequence names */
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int_f *idevt; /* unit number for tag information */
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int_f *idevc; /* unit number for comment file */
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int_f *relpg; /* relative positions of gels in sequences */
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int_f *lngthg; /* lengths of sequences */
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int_f *lnbr; /* left neighbours */
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int_f *rnbr; /* right neighbours */
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int_f *maxgel; /* maximum length of gel */
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int_f *idbsiz; /* size of database */
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int_f *lincon; /* current contig to edit */
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int_f *llino; /* left-most gel in contig */
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int_f *lnconl; /* left contig for join */
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int_f *llinol; /* left-most gel in left contig for join */
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int_f *lnconr; /* right contig fro join */
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int_f *llinor; /* left-most gel in right contig for join */
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int_f *perced; /* cutoff for consensus calculation */
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int_f *ngels; /* number of gels in database */
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int_f *nconts; /* number of contigs in database */
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int_f *idm; /* database type */
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} SaveStruct;
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extern SaveStruct saveState;
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extern int editorMode;
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extern int editModeIsInsert();
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extern int editModeIsSuperman();
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extern int inJoinMode();
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extern int editorLocked();
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extern int editorLockedPos(int force);
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#endif /* _contigEditor_h */
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