staden-lg

History

kuoi fe1d5a834e use default makefile and recovery previous alpha makefile		2023-04-14 02:09:01 +08:00
..
FtoC.c	init	2021-12-04 05:07:58 +00:00
FtoC.h	init	2021-12-04 05:07:58 +00:00
README	init	2021-12-04 05:07:58 +00:00
README0	init	2021-12-04 05:07:58 +00:00
Sheet.c	fix: compile broken	2023-04-12 20:47:23 +08:00
Sheet.h	fix: compile broken	2023-04-12 20:47:23 +08:00
SheetP.h	fix: compile broken	2023-04-12 20:47:23 +08:00
SmeLine.c	init	2021-12-04 05:07:58 +00:00
aix-bits.c	init	2021-12-04 05:07:58 +00:00
analps89.f	init	2021-12-04 05:07:58 +00:00
anals89.f	init	2021-12-04 05:07:58 +00:00
asubs89.f	init	2021-12-04 05:07:58 +00:00
bsplit.f	init	2021-12-04 05:07:58 +00:00
conEdit.f	init	2021-12-04 05:07:58 +00:00
contigEditor.c	init	2021-12-04 05:07:58 +00:00
contigEditor.h	init	2021-12-04 05:07:58 +00:00
copyright.h	init	2021-12-04 05:07:58 +00:00
cvt.c	init	2021-12-04 05:07:58 +00:00
dap.f	init	2021-12-04 05:07:58 +00:00
dbchek.f	init	2021-12-04 05:07:58 +00:00
dbsyscommon.f	init	2021-12-04 05:07:58 +00:00
dbsyscommon.f~	init	2021-12-04 05:07:58 +00:00
dbsysnew.f	init	2021-12-04 05:07:58 +00:00
dbsysold.f	init	2021-12-04 05:07:58 +00:00
dialogues.c	init	2021-12-04 05:07:58 +00:00
dialogues.h	init	2021-12-04 05:07:58 +00:00
dias89.f	init	2021-12-04 05:07:58 +00:00
edMenu.c	init	2021-12-04 05:07:58 +00:00
edMenu.h	init	2021-12-04 05:07:58 +00:00
edUtils.c	init	2021-12-04 05:07:58 +00:00
edUtils.h	init	2021-12-04 05:07:58 +00:00
extend.c	init	2021-12-04 05:07:58 +00:00
extend.h	init	2021-12-04 05:07:58 +00:00
fmain.f	init	2021-12-04 05:07:58 +00:00
fort.h	init	2021-12-04 05:07:58 +00:00
fortran.h	init	2021-12-04 05:07:58 +00:00
fxmain.f	init	2021-12-04 05:07:58 +00:00
gen_a.sh	add: use shell to replace generate .a	2023-04-13 02:46:26 +08:00
gip.f	init	2021-12-04 05:07:58 +00:00
help.c	init	2021-12-04 05:07:58 +00:00
help.h	init	2021-12-04 05:07:58 +00:00
helpnmenu.c	init	2021-12-04 05:07:58 +00:00
helpnmenu.h	init	2021-12-04 05:07:58 +00:00
lip.f	init	2021-12-04 05:07:58 +00:00
locks.c	init	2021-12-04 05:07:58 +00:00
locks.h	init	2021-12-04 05:07:58 +00:00
main.c	init	2021-12-04 05:07:58 +00:00
main.h	init	2021-12-04 05:07:58 +00:00
makefile	use default makefile and recovery previous alpha makefile	2023-04-14 02:09:01 +08:00
makefile-aix	init	2021-12-04 05:07:58 +00:00
makefile-alpha	use default makefile and recovery previous alpha makefile	2023-04-14 02:09:01 +08:00
makefile-dec	init	2021-12-04 05:07:58 +00:00
makefile-sgi	init	2021-12-04 05:07:58 +00:00
makefile-solaris	init	2021-12-04 05:07:58 +00:00
makefile-sun	init	2021-12-04 05:07:58 +00:00
mcspec.c	init	2021-12-04 05:07:58 +00:00
mcspec.h	init	2021-12-04 05:07:58 +00:00
mep.f	init	2021-12-04 05:07:58 +00:00
mepmen.f	init	2021-12-04 05:07:58 +00:00
mepsub.f	init	2021-12-04 05:07:58 +00:00
mystdlib.h	init	2021-12-04 05:07:58 +00:00
nip.f	init	2021-12-04 05:07:58 +00:00
nipf.f	init	2021-12-04 05:07:58 +00:00
nipl.f	init	2021-12-04 05:07:58 +00:00
nipmen.f	init	2021-12-04 05:07:58 +00:00
nxhelpmenu.c	init	2021-12-04 05:07:58 +00:00
nxhelpmenu.h	init	2021-12-04 05:07:58 +00:00
nxspec.f	init	2021-12-04 05:07:58 +00:00
patternn.f	init	2021-12-04 05:07:58 +00:00
patternnc.f	init	2021-12-04 05:07:58 +00:00
patternp.f	init	2021-12-04 05:07:58 +00:00
patternpc.f	init	2021-12-04 05:07:58 +00:00
pip.f	init	2021-12-04 05:07:58 +00:00
pipl.f	init	2021-12-04 05:07:58 +00:00
pipmen.f	init	2021-12-04 05:07:58 +00:00
pl4010.f	init	2021-12-04 05:07:58 +00:00
plX.c	init	2021-12-04 05:07:58 +00:00
plX.h	init	2021-12-04 05:07:58 +00:00
plot92.f	init	2021-12-04 05:07:58 +00:00
plotLog.c	init	2021-12-04 05:07:58 +00:00
plotLog.h	init	2021-12-04 05:07:58 +00:00
postscript.c	init	2021-12-04 05:07:58 +00:00
postscript.h	init	2021-12-04 05:07:58 +00:00
progSpec.h	init	2021-12-04 05:07:58 +00:00
rep.f	init	2021-12-04 05:07:58 +00:00
sap.f	init	2021-12-04 05:07:58 +00:00
sapf.f	init	2021-12-04 05:07:58 +00:00
sapmen.f	init	2021-12-04 05:07:58 +00:00
searchUtils.c	init	2021-12-04 05:07:58 +00:00
searchUtils.h	init	2021-12-04 05:07:58 +00:00
seeme-aix.f	init	2021-12-04 05:07:58 +00:00
seeme-al.f	init	2021-12-04 05:07:58 +00:00
seeme-dec.f	fix: vepe, part of staden/bap	2023-04-13 02:45:32 +08:00
seeme-sg.f	init	2021-12-04 05:07:58 +00:00
seeme.f	init	2021-12-04 05:07:58 +00:00
select.c	init	2021-12-04 05:07:58 +00:00
select.h	init	2021-12-04 05:07:58 +00:00
seqlibsubs.f	init	2021-12-04 05:07:58 +00:00
sethelp.c	init	2021-12-04 05:07:58 +00:00
sethelp.f	init	2021-12-04 05:07:58 +00:00
sip.f	init	2021-12-04 05:07:58 +00:00
sipl.f	init	2021-12-04 05:07:58 +00:00
sipmen.f	init	2021-12-04 05:07:58 +00:00
splitp1.f	init	2021-12-04 05:07:58 +00:00
splitp2.f	init	2021-12-04 05:07:58 +00:00
splitp3.f	init	2021-12-04 05:07:58 +00:00
subs89.f	init	2021-12-04 05:07:58 +00:00
summar.f	init	2021-12-04 05:07:58 +00:00
tagEditor.c	init	2021-12-04 05:07:58 +00:00
tagU1.c	init	2021-12-04 05:07:58 +00:00
tagU2.c	init	2021-12-04 05:07:58 +00:00
tagUtils.h	init	2021-12-04 05:07:58 +00:00
tagdb.h	init	2021-12-04 05:07:58 +00:00
tagdbparse.c	init	2021-12-04 05:07:58 +00:00
textOutput.c	init	2021-12-04 05:07:58 +00:00
textOutput.h	init	2021-12-04 05:07:58 +00:00
tman_basesDisplay.c	init	2021-12-04 05:07:58 +00:00
tman_basesDisplay.h	init	2021-12-04 05:07:58 +00:00
tman_context.c	init	2021-12-04 05:07:58 +00:00
tman_context.h	init	2021-12-04 05:07:58 +00:00
tman_display.c	init	2021-12-04 05:07:58 +00:00
tman_display.h	init	2021-12-04 05:07:58 +00:00
tman_gadgets.c	init	2021-12-04 05:07:58 +00:00
tman_gadgets.h	init	2021-12-04 05:07:58 +00:00
tman_main.c	init	2021-12-04 05:07:58 +00:00
tman_main.h	init	2021-12-04 05:07:58 +00:00
tman_traceDisplay.c	init	2021-12-04 05:07:58 +00:00
tman_traceDisplay.h	init	2021-12-04 05:07:58 +00:00
trans.c	init	2021-12-04 05:07:58 +00:00
undo.c	init	2021-12-04 05:07:58 +00:00
undo.h	init	2021-12-04 05:07:58 +00:00
userface.c	init	2021-12-04 05:07:58 +00:00
userface.f	init	2021-12-04 05:07:58 +00:00
userface.h	init	2021-12-04 05:07:58 +00:00
userfacecom.c	fix: vepe, part of staden/bap	2023-04-13 02:45:32 +08:00
values.h	init	2021-12-04 05:07:58 +00:00
vep.f	init	2021-12-04 05:07:58 +00:00
xdapSpec.c	init	2021-12-04 05:07:58 +00:00
xdapmain.c	init	2021-12-04 05:07:58 +00:00
xmenu.c	init	2021-12-04 05:07:58 +00:00
xmepSpec.c	init	2021-12-04 05:07:58 +00:00
xnipSpec.c	init	2021-12-04 05:07:58 +00:00
xpipSpec.c	init	2021-12-04 05:07:58 +00:00
xsapConEdit.f	init	2021-12-04 05:07:58 +00:00
xsapSpec.c	init	2021-12-04 05:07:58 +00:00
xsipSpec.c	init	2021-12-04 05:07:58 +00:00
xspec.f	init	2021-12-04 05:07:58 +00:00

README

The staden suite of sequence analysis programs for the SUN/X11
--------------------------------------------------------------

The contents of this directory should be (at least):
bin		executable sequence analysis programs
help		helpfiles used by these programs
staden.l        manual page
staden.login	csh initialisations
staden.profile	sh initialisations
tables		tables used by the programs

Installers should first print out a copy of the manual page.
This describes the current state of the software and how to
invoke the initialisations. The manual page should be placed
somewhere where `man' can find it.

The directory structure should be position independent. It's
location, however, must be encoded in the environment
variable $STADENROOT. This is described in the man page.


xdap - Sequence assembly program
--------------------------------

This is the source directory for the dap and xdap sequence assembly
programmes, and convert_project.  As well as the sources you should
find a makefile and a default resources file "Xdap".

The "xdap" application can be constructed by simply typing "make xdap",
and installed by typing "make installx" As xdap requires objects from
the "staden" and "ted" directories, it should be made after the staden
package proper and the trace editor have been made.

The default X resource file "Xdap" files is found in
$STADENROOT/tables, and the environment variable XFILESEARCHPATH is set
in staden.login to refer to it. This file could also be placed in the
"/usr/lib/X11/app-defaults" directory.