fix: compile all

2023-04-14 02:02:58 +08:00 · 2023-04-14 02:02:58 +08:00 · 82b82d9e1d
commit 82b82d9e1d
parent 3b42fb10b0
43 changed files with 15 additions and 11 deletions
--- a/bin/alfsplit
+++ b/bin/alfsplit
--- a/bin/bap
+++ b/bin/bap
--- a/bin/convert
+++ b/bin/convert
--- a/bin/cop
+++ b/bin/cop
--- a/bin/cop-bap
+++ b/bin/cop-bap
--- a/bin/dap
+++ b/bin/dap
--- a/bin/frog
+++ b/bin/frog
--- a/bin/getABISampleName
+++ b/bin/getABISampleName
--- a/bin/gip
+++ b/bin/gip
--- a/bin/lip
+++ b/bin/lip
--- a/bin/makeSCF
+++ b/bin/makeSCF
--- a/bin/mep
+++ b/bin/mep
--- a/bin/nip
+++ b/bin/nip
--- a/bin/nipf
+++ b/bin/nipf
--- a/bin/nipl
+++ b/bin/nipl
--- a/bin/pip
+++ b/bin/pip
--- a/bin/pipl
+++ b/bin/pipl
--- a/bin/rep
+++ b/bin/rep
--- a/bin/sap
+++ b/bin/sap
--- a/bin/sapf
+++ b/bin/sapf
--- a/bin/sethelp
+++ b/bin/sethelp
--- a/bin/sip
+++ b/bin/sip
--- a/bin/sipl
+++ b/bin/sipl
--- a/bin/splitp1
+++ b/bin/splitp1
--- a/bin/splitp2
+++ b/bin/splitp2
--- a/bin/splitp3
+++ b/bin/splitp3
--- a/bin/ted
+++ b/bin/ted
--- a/bin/trace2seq
+++ b/bin/trace2seq
--- a/bin/vep
+++ b/bin/vep
--- a/bin/xbap
+++ b/bin/xbap
--- a/bin/xdap
+++ b/bin/xdap
--- a/bin/xmep
+++ b/bin/xmep
--- a/bin/xnip
+++ b/bin/xnip
--- a/bin/xpip
+++ b/bin/xpip
--- a/bin/xsap
+++ b/bin/xsap
--- a/bin/xsip
+++ b/bin/xsip
--- a/src/abi/2rs
+++ b/src/abi/2rs
--- a/src/abi/getABISampleName
+++ b/src/abi/getABISampleName
--- a/src/abi/makefile-alpha
+++ b/src/abi/makefile-alpha
@ -5,7 +5,8 @@
 #
 # Programs made by this makefile
 #
-PROGS = getABISampleName
+PROGS = getABISampleName 2rs
+all: $(PROGS)

 #
 # Where the wild things are
@ -26,6 +27,8 @@ LDFLAGS = -g
 getABISampleName: getABISampleName.o
 	$(LD) $(LDFLAGS) -o getABISampleName getABISampleName.o

+2rs: 2rs.o
+	$(LD) $(LDFLAGS) -o 2rs 2rs.o

 #
 # Special dependencies
--- a/src/cop/makefile-alpha
+++ b/src/cop/makefile-alpha
@ -6,7 +6,7 @@
 # Programs made by this makefile
 #
 PROGS = cop cop-bap
-
+all: $(PROGS)
 #
 # Where the wild things are
 #
--- a/src/getMCH/makefile-alpha
+++ b/src/getMCH/makefile-alpha
@ -23,7 +23,7 @@
 # Programs made by this makefile
 #
 PROGS = getMCH trace2seq
-
+all: $(PROGS)
 #
 # Where the wild things are
 #
--- a/src/indexseqlibs/excludewords.c
+++ b/src/indexseqlibs/excludewords.c
@ -13,7 +13,7 @@ static FILE *out;

 static int line_comp(char *ex, char *in, int l)
 /*
-** Compare exclude line with inline
+** Compare exclude line with cinline
 */
 {
    return strncmp(ex,in+11,l);
@ -28,13 +28,13 @@ static void process()
 */
 {
    char exline[MAXLINE];
-    char inline[MAXLINE];
+    char cinline[MAXLINE];
    char *exok, *inok;
    int compare;


    exok = fgets(exline,MAXLINE,ex);
-    inok = fgets(inline,MAXLINE,in);
+    inok = fgets(cinline,MAXLINE,in);

    while (exok && inok) {

@ -43,15 +43,15 @@ static void process()
 	if (compare < 0)
 	    exok = fgets(exline,MAXLINE,ex);
 	else if (compare > 0) {
-	    fprintf(out,"%s",inline);
-	    inok = fgets(inline,MAXLINE,in);
+	    fprintf(out,"%s",cinline);
+	    inok = fgets(cinline,MAXLINE,in);
 	} else
-	    inok = fgets(inline,MAXLINE,in);
+	    inok = fgets(cinline,MAXLINE,in);

    }

-    while (inok = fgets(inline,MAXLINE,in))
-	fprintf(out,"%s",inline);
+    while (inok = fgets(cinline,MAXLINE,in))
+	fprintf(out,"%s",cinline);

 }

--- a/src/indexseqlibs/makefile-alpha
+++ b/src/indexseqlibs/makefile-alpha
@ -2,6 +2,7 @@
 # indexseqlibs - Alpha version
 #

+all: $(PROGS)

 #
 # Programs need making