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b/src/abi/makefile-alpha index 2310ebc..b0275d9 100644 --- a/src/abi/makefile-alpha +++ b/src/abi/makefile-alpha @@ -5,7 +5,8 @@ # # Programs made by this makefile # -PROGS = getABISampleName +PROGS = getABISampleName 2rs +all: $(PROGS) # # Where the wild things are @@ -26,6 +27,8 @@ LDFLAGS = -g getABISampleName: getABISampleName.o $(LD) $(LDFLAGS) -o getABISampleName getABISampleName.o +2rs: 2rs.o + $(LD) $(LDFLAGS) -o 2rs 2rs.o # # Special dependencies diff --git a/src/cop/makefile-alpha b/src/cop/makefile-alpha index cc038fc..7d7d060 100644 --- a/src/cop/makefile-alpha +++ b/src/cop/makefile-alpha @@ -6,7 +6,7 @@ # Programs made by this makefile # PROGS = cop cop-bap - +all: $(PROGS) # # Where the wild things are # diff --git a/src/getMCH/makefile-alpha b/src/getMCH/makefile-alpha index 085ab8c..ffb6dee 100644 --- a/src/getMCH/makefile-alpha +++ b/src/getMCH/makefile-alpha @@ -23,7 +23,7 @@ # Programs made by this makefile # PROGS = getMCH trace2seq - +all: $(PROGS) # # Where the wild things are # diff --git a/src/indexseqlibs/excludewords.c b/src/indexseqlibs/excludewords.c index affbea3..4653ef8 100644 --- a/src/indexseqlibs/excludewords.c +++ b/src/indexseqlibs/excludewords.c @@ -13,7 +13,7 @@ static FILE *out; static int line_comp(char *ex, char *in, int l) /* -** Compare exclude line with inline +** Compare exclude line with cinline */ { return strncmp(ex,in+11,l); @@ -28,13 +28,13 @@ static void process() */ { char exline[MAXLINE]; - char inline[MAXLINE]; + char cinline[MAXLINE]; char *exok, *inok; int compare; exok = fgets(exline,MAXLINE,ex); - inok = fgets(inline,MAXLINE,in); + inok = fgets(cinline,MAXLINE,in); while (exok && inok) { @@ -43,15 +43,15 @@ static void process() if (compare < 0) exok = fgets(exline,MAXLINE,ex); else if (compare > 0) { - fprintf(out,"%s",inline); - inok = fgets(inline,MAXLINE,in); + fprintf(out,"%s",cinline); + inok = fgets(cinline,MAXLINE,in); } else - inok = fgets(inline,MAXLINE,in); + inok = fgets(cinline,MAXLINE,in); } - while (inok = fgets(inline,MAXLINE,in)) - fprintf(out,"%s",inline); + while (inok = fgets(cinline,MAXLINE,in)) + fprintf(out,"%s",cinline); } diff --git a/src/indexseqlibs/makefile-alpha b/src/indexseqlibs/makefile-alpha index 86d0689..29f98f5 100644 --- a/src/indexseqlibs/makefile-alpha +++ b/src/indexseqlibs/makefile-alpha @@ -2,6 +2,7 @@ # indexseqlibs - Alpha version # +all: $(PROGS) # # Programs need making