add: current readme
This commit is contained in:
parent
a8136c75ba
commit
047d935b02
2 changed files with 67 additions and 0 deletions
67
README.md
Normal file
67
README.md
Normal file
|
@ -0,0 +1,67 @@
|
|||
# STADEN-LG
|
||||
|
||||
STADEN Last Generation
|
||||
|
||||
## Introduction
|
||||
|
||||
This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely.
|
||||
|
||||
## Build
|
||||
|
||||
You should clone this repo and cd to the repo get the `$pkgname` via `pwd`
|
||||
|
||||
```
|
||||
# build easy
|
||||
for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits
|
||||
do
|
||||
cd $pkgname/src/$pkgalone
|
||||
make
|
||||
done
|
||||
|
||||
# compile x related
|
||||
cd $pkgname/src/staden
|
||||
bash gen_a.sh
|
||||
make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap
|
||||
cd $pkgname/src/bap
|
||||
make bap xbap
|
||||
for pkgalone in vepe update_subclones scf
|
||||
do
|
||||
cd $pkgname/src/$pkgalone
|
||||
make
|
||||
done
|
||||
```
|
||||
|
||||
Or you can get this pkg from BioArchLinux repo.
|
||||
|
||||
## Todo
|
||||
|
||||
Following pkgs need your hands.
|
||||
|
||||
- [ ] nip
|
||||
|
||||
- [ ] sip
|
||||
|
||||
- [ ] rep
|
||||
|
||||
- [ ] lip
|
||||
|
||||
- [ ] vep
|
||||
|
||||
- [ ] nipl
|
||||
|
||||
- [ ] pipl
|
||||
|
||||
- [ ] sipl
|
||||
|
||||
- [ ] xnip
|
||||
|
||||
- [ ] xpip
|
||||
|
||||
- [ ] xsip
|
||||
|
||||
|
||||
## License
|
||||
|
||||
- Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License.
|
||||
|
||||
- Copyright (c) 2023~ Everyone. GPL License.
|
Loading…
Reference in a new issue