From 047d935b021d0e5ac070b36de8ab41800947db06 Mon Sep 17 00:00:00 2001 From: Kuoi Date: Fri, 14 Apr 2023 02:56:17 +0800 Subject: [PATCH] add: current readme --- README.md | 67 ++++++++++++++++++++++++++++++++++++ README.txt => README1993.txt | 0 2 files changed, 67 insertions(+) create mode 100644 README.md rename README.txt => README1993.txt (100%) diff --git a/README.md b/README.md new file mode 100644 index 0000000..ad679a3 --- /dev/null +++ b/README.md @@ -0,0 +1,67 @@ +# STADEN-LG + +STADEN Last Generation + +## Introduction + +This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely. + +## Build + +You should clone this repo and cd to the repo get the `$pkgname` via `pwd` + +``` +# build easy +for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits +do +cd $pkgname/src/$pkgalone +make +done + +# compile x related +cd $pkgname/src/staden +bash gen_a.sh +make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap +cd $pkgname/src/bap +make bap xbap +for pkgalone in vepe update_subclones scf +do +cd $pkgname/src/$pkgalone +make +done +``` + +Or you can get this pkg from BioArchLinux repo. + +## Todo + +Following pkgs need your hands. + +- [ ] nip + +- [ ] sip + +- [ ] rep + +- [ ] lip + +- [ ] vep + +- [ ] nipl + +- [ ] pipl + +- [ ] sipl + +- [ ] xnip + +- [ ] xpip + +- [ ] xsip + + +## License + +- Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License. + +- Copyright (c) 2023~ Everyone. GPL License. diff --git a/README.txt b/README1993.txt similarity index 100% rename from README.txt rename to README1993.txt