gde_linux/SUPPORT/Zuk_to_gen.c

#include <stdio.h>
#include <string.h>

typedef struct Sequence {
	int len;
	char name[80];
	char type[8];
	char *nuc;
} Sequence;

main()
{
	char a[5000], b[5000], cinline[132];
	int pos1, pos2, pos3, i, j, k, FLAG;
	Sequence pair[2];

	for (j = 0; j < 5000; j++) b[j] = '-';
	FLAG = (int)gets(cinline);
	for (j = 0; FLAG; j++) {
		FLAG = (int)gets(cinline);
		sscanf(cinline, "%d", &pos1);
		if ((sscanf(cinline, "%*6c %c  %d %d %d", &(a[j]), &k, &pos2,
			    &pos3) == 4) &&
		    (FLAG)) {
			if (pos3 != 0) {
				if (pos1 < pos3) {
					b[pos1 - 1] = '[';
					b[pos3 - 1] = ']';
				}
				else {
					b[pos3 - 1] = '[';
					b[pos1 - 1] = ']';
				}
			}
		}
		else {
			pair[0].len = j;
			strcpy(pair[0].name, "HELIX");
			strcpy(pair[0].type, "TEXT");

			pair[1].len = j;
			/*
						sscanf(cinline,"%*24c
			   %s",pair[1].name);
			*/
			strcpy(pair[1].name, "Sequence");
			strcpy(pair[1].type, "RNA");

			pair[0].nuc = b;
			pair[1].nuc = a;

			WriteGen(pair, stdout, 2);
			for (j = 0; j < 5000; j++) b[j] = '-';
			j = -1;
		}
	}
	exit(0);
}

WriteGen(seq, file, numseq) Sequence *seq;
FILE *file;
int numseq;
{
	register i, j;
	char temp[14];

	for (j = 0; j < numseq; j++) fprintf(file, "%-.12s\n", seq[j].name);

	fprintf(file, "ZZZZZZZZZZ\n");

	for (j = 0; j < numseq; j++) {
		strcpy(temp, seq[j].name);
		for (i = strlen(temp); i < 13; i++) temp[i] = ' ';
		temp[i] = '\0';
		fprintf(file, "LOCUS      %-.12s %s	%d BP\n", temp,
			seq[j].type, seq[j].len);

		fprintf(file, "ORIGIN");
		for (i = 0; i < seq[j].len; i++) {
			if (i % 60 == 0) fprintf(file, "\n%9d", i + 1);
			if (i % 10 == 0) fprintf(file, " ");
			fprintf(file, "%c", seq[j].nuc[i]);
		}
		fprintf(file, "\n//\n");
	}
	return;
}