39 lines
970 B
Markdown
39 lines
970 B
Markdown
# TNT Script used by Guoyi
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This script follows MIT and part of script is from setk.run belonging to Salvador Arias (Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).
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## Usage
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- Place this script and your matrix tnt file `filename` under the folder that you call `tnt` or `exe` file is placed
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- Enter `tnt`
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- Enter command `guoyi filename;`
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## Functions
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- Estimated implied weighting K value.
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- Search trees via TBR Mult and Xmult.
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- Perform Strict consensus.
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- Calculate Relative Bremer support, jackknifing, and bootstrap.
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- Calculate TL, CI, and RI.
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## Options
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- Results instructions are at the end of `tnt.log`.
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- `trees.tre`, `con.tre` are trees with taxaname.
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- `trees_no.tre`, `con_no.tre` are trees without taxaname.
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- `con_no.tre` can be put into Winclada with your tnt matrix file `filename`.
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- `nelsen` can be replaced by `majority`.
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- `xmult` and `mult` replications and hold trees number can be adjusted.
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