malacology/TNT_Script
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fix: equal; add: tv

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This commit is contained in:
kuoi 2023-10-10 00:35:15 +08:00
parent b0ea8a801e
commit b2282592d1
1 changed files with 30 additions and 25 deletions
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55
guoyi.run
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@ -91,26 +91,26 @@ if (argnumber<6)
else else
set rsmp %6; set rsmp %6;
loop 1 5 loop 1 5
if ('rsmp' >= 4) if ('rsmp' >= 4)
set dosym 1; set dosym 1;
set rsmp 'rsmp'-4; set rsmp 'rsmp'-4;
else else
if ('rsmp' >= 2) if ('rsmp' >= 2)
set doboot 1; set doboot 1;
set rsmp 'rsmp'-2; set rsmp 'rsmp'-2;
else else
if ('rsmp' >= 1) if ('rsmp' >= 1)
set dojak 1; set dojak 1;
set rsmp 'rsmp'-1; set rsmp 'rsmp'-1;
else else
if ('rsmp' >=0.2) if ('rsmp' >= 0.2)
set dobrs 1; set dobrs 1;
set rsmp 'rsmp'-0.2; set rsmp 'rsmp'-0.2;
else else
if ('rsmp' >=0.1) if ('rsmp' >= 0.1)
set dorbrs 1; set dorbrs 1;
set rsmp 'rsmp'-0.1; set rsmp 'rsmp'-0.1;
end end end end end end end end end end
stop stop
end end
@ -166,15 +166,15 @@ end end
/*handle search*/ /*handle search*/
if (ntax<=25) if (ntax<=25)
if ('doeiw') if ('doeiw')
search=2; set search 2;
else else
search=1; set search 1;
end end
else else
if (ntax<75) if (ntax<75)
search=2 set search 2;
else else
search=3 set search 3;
end end
end end
@ -319,6 +319,10 @@ end end end
var: contree; var: contree;
set contree ntrees; set contree ntrees;
/*Store consensus tree to tree vault*/
tv>/;
tchoose 0.'npars';
/*Get rbr/br/jak/boot/sym support and get consensus tree*/ /*Get rbr/br/jak/boot/sym support and get consensus tree*/
ttags=; ttags=;
ttags]; /*in one line*/ ttags]; /*in one line*/
@ -349,7 +353,8 @@ if ('dobremer')
end end
/*choose final tree*/ /*Choose final tree*/
tv<;
tchoose/; tchoose/;
/*adjust to zero following Pablo Goloboff*/ /*adjust to zero following Pablo Goloboff*/