From b2282592d1edf007b4be2512f6eb0beed9dfb959 Mon Sep 17 00:00:00 2001
From: Kuoi <kuoi@bioarchlinux.org>
Date: Tue, 10 Oct 2023 00:35:15 +0800
Subject: [PATCH] fix: equal; add: tv

---
 guoyi.run | 55 ++++++++++++++++++++++++++++++-------------------------
 1 file changed, 30 insertions(+), 25 deletions(-)

diff --git a/guoyi.run b/guoyi.run
index 6f37fc7..e0723cf 100644
--- a/guoyi.run
+++ b/guoyi.run
@@ -91,26 +91,26 @@ if (argnumber<6)
 else
   set rsmp %6;
   loop 1 5
-  if ('rsmp' >= 4)
-    set dosym 1;
-    set rsmp 'rsmp'-4;
-  else
-  if ('rsmp' >= 2)
-    set doboot 1;
-    set rsmp 'rsmp'-2;
-  else
-  if ('rsmp' >= 1)
-    set dojak 1;
-    set rsmp 'rsmp'-1;
-  else
-  if ('rsmp' >=0.2)
-    set dobrs 1;
-    set rsmp 'rsmp'-0.2;
-  else
-  if ('rsmp' >=0.1)
-    set dorbrs 1;
-    set rsmp 'rsmp'-0.1;
-  end end end end end
+    if ('rsmp' >= 4)
+      set dosym 1;
+      set rsmp 'rsmp'-4;
+    else
+    if ('rsmp' >= 2)
+      set doboot 1;
+      set rsmp 'rsmp'-2;
+    else
+    if ('rsmp' >= 1)
+      set dojak 1;
+      set rsmp 'rsmp'-1;
+    else
+    if ('rsmp' >= 0.2)
+      set dobrs 1;
+      set rsmp 'rsmp'-0.2;
+    else
+    if ('rsmp' >= 0.1)
+      set dorbrs 1;
+      set rsmp 'rsmp'-0.1;
+    end end end end end
   stop
 end
 
@@ -166,15 +166,15 @@ end end
 /*handle search*/
 if (ntax<=25)
   if ('doeiw')
-    search=2;
+    set search 2;
   else
-    search=1;
+    set search 1;
   end
 else
   if (ntax<75)
-    search=2
+    set search 2;
   else
-    search=3
+    set search 3;
   end
 end
 
@@ -319,6 +319,10 @@ end end end
 var: contree;
 set contree ntrees;
 
+/*Store consensus tree to tree vault*/
+tv>/;
+tchoose 0.'npars';
+
 /*Get rbr/br/jak/boot/sym support and get consensus tree*/
 ttags=;
 ttags]; /*in one line*/
@@ -349,7 +353,8 @@ if ('dobremer')
 
 end
   
-/*choose final tree*/
+/*Choose final tree*/
+tv<;
 tchoose/;
 
 /*adjust to zero following Pablo Goloboff*/