polish using macro
This commit is contained in:
parent
39c4340a6d
commit
97cdc9a302
4 changed files with 41 additions and 43 deletions
15
README
15
README
|
@ -2,9 +2,15 @@
|
|||
|
||||
This scripts are followed MIT except for setk.run which belongs to Salvador Arias(Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).
|
||||
|
||||
## tnt.run
|
||||
## Usage
|
||||
|
||||
- `file.tnt` must be changed to your own file;
|
||||
- OS: Arch Linux;
|
||||
|
||||
- `tnt run guoyi.run file.tnt`, `file.tnt` is your data;
|
||||
|
||||
- Type `;` and enter;
|
||||
|
||||
## Options
|
||||
|
||||
- `trees.tre`, `bt.tre` are trees with taxaname;
|
||||
|
||||
|
@ -14,8 +20,3 @@ This scripts are followed MIT except for setk.run which belongs to Salvador Aria
|
|||
|
||||
- `boot` can be replaced by `jack`;
|
||||
|
||||
## setk_tnt.run
|
||||
|
||||
- `file.tnt` must be changed to your own file;
|
||||
|
||||
- You can find the recommended k from `setk.log` and then change in `piwe=` `tnt.run`;
|
||||
|
|
33
guoyi.run
Normal file
33
guoyi.run
Normal file
|
@ -0,0 +1,33 @@
|
|||
log tnt.log;
|
||||
macro=;
|
||||
taxname=;
|
||||
mxram 10240;
|
||||
nstates 32;
|
||||
nstates NOGAPS;
|
||||
|
||||
procedure %1;
|
||||
setk.run;
|
||||
|
||||
procedure %1;
|
||||
hold 1000;
|
||||
xpiwe(*;
|
||||
mult=replic 1000 tbr hold 1;
|
||||
xpiwe&;piwe&;
|
||||
export= trees.tre;
|
||||
taxname-;
|
||||
export= trees_no.tre;
|
||||
taxname=;
|
||||
|
||||
bbreak=tbr;
|
||||
majority *;
|
||||
|
||||
ttags=;
|
||||
resample boot replications 1000;
|
||||
ttags & bt.svg thickness 7 italics fontsize 15;
|
||||
export < bt.tre;
|
||||
taxname-;
|
||||
export - bt_no.tre;
|
||||
|
||||
length *;
|
||||
stats.run;
|
||||
quit ;
|
|
@ -1,4 +0,0 @@
|
|||
log setk.log;
|
||||
p file.tnt;
|
||||
setk.run;
|
||||
quit;
|
32
tnt.run
32
tnt.run
|
@ -1,32 +0,0 @@
|
|||
mxram 10240 ;
|
||||
nstates 32 ;
|
||||
nstates NOGAPS ;
|
||||
|
||||
piwe=12;
|
||||
|
||||
procedure file.tnt ;
|
||||
log tnt.log ;
|
||||
taxname= ;
|
||||
|
||||
hold 100000 ;
|
||||
xpiwe(*; mult=replic 1000 tbr hold 10;
|
||||
xpiwe&; piwe&;
|
||||
export= trees.tre ;
|
||||
taxname- ;
|
||||
export= trees_no.tre ;
|
||||
taxname= ;
|
||||
|
||||
bbreak=tbr ;
|
||||
majority * ;
|
||||
|
||||
ttags= ;
|
||||
resample boot replications 1000;
|
||||
ttags & bt.svg thickness 7 italics fontsize 15;
|
||||
export < bt.tre ;
|
||||
taxname- ;
|
||||
export - bt_no.tre;
|
||||
|
||||
length * ;
|
||||
stats.run;
|
||||
|
||||
quit ;
|
Loading…
Reference in a new issue