polish using macro

This commit is contained in:
kuoi 2023-02-26 03:32:18 +08:00
parent 39c4340a6d
commit 97cdc9a302
4 changed files with 41 additions and 43 deletions

15
README
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@ -2,9 +2,15 @@
This scripts are followed MIT except for setk.run which belongs to Salvador Arias(Instituto Miguel Lillo, San Miguel de Tucumán, Argentina). This scripts are followed MIT except for setk.run which belongs to Salvador Arias(Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).
## tnt.run ## Usage
- `file.tnt` must be changed to your own file; - OS: Arch Linux;
- `tnt run guoyi.run file.tnt`, `file.tnt` is your data;
- Type `;` and enter;
## Options
- `trees.tre`, `bt.tre` are trees with taxaname; - `trees.tre`, `bt.tre` are trees with taxaname;
@ -14,8 +20,3 @@ This scripts are followed MIT except for setk.run which belongs to Salvador Aria
- `boot` can be replaced by `jack`; - `boot` can be replaced by `jack`;
## setk_tnt.run
- `file.tnt` must be changed to your own file;
- You can find the recommended k from `setk.log` and then change in `piwe=` `tnt.run`;

33
guoyi.run Normal file
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log tnt.log;
macro=;
taxname=;
mxram 10240;
nstates 32;
nstates NOGAPS;
procedure %1;
setk.run;
procedure %1;
hold 1000;
xpiwe(*;
mult=replic 1000 tbr hold 1;
xpiwe&;piwe&;
export= trees.tre;
taxname-;
export= trees_no.tre;
taxname=;
bbreak=tbr;
majority *;
ttags=;
resample boot replications 1000;
ttags & bt.svg thickness 7 italics fontsize 15;
export < bt.tre;
taxname-;
export - bt_no.tre;
length *;
stats.run;
quit ;

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log setk.log;
p file.tnt;
setk.run;
quit;

32
tnt.run
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mxram 10240 ;
nstates 32 ;
nstates NOGAPS ;
piwe=12;
procedure file.tnt ;
log tnt.log ;
taxname= ;
hold 100000 ;
xpiwe(*; mult=replic 1000 tbr hold 10;
xpiwe&; piwe&;
export= trees.tre ;
taxname- ;
export= trees_no.tre ;
taxname= ;
bbreak=tbr ;
majority * ;
ttags= ;
resample boot replications 1000;
ttags & bt.svg thickness 7 italics fontsize 15;
export < bt.tre ;
taxname- ;
export - bt_no.tre;
length * ;
stats.run;
quit ;