malacology/TNT_Script
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polish: readme give more details

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kuoi 2023-07-17 06:31:26 +08:00
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README.md
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@ -14,11 +14,11 @@ The TNT script follows MIT and part of script is from setk.run belonging to Salv
- Estimate implied weighting K value. - Estimate implied weighting K value.
- Search trees via TBR Mult and Xmult. - Search trees via TBR Mult (1000 times) and Xmult (use random sectorial searches, produce 1,000 hits to best length and stop, 10 cycles of drifting, ratchet and fusing).
- Perform Strict consensus. - Perform Strict consensus.
- Calculate Relative Bremer support, jackknifing, and bootstrap. - Calculate Relative Bremer support, jackknifing (1,000 times), and bootstrap (1,000 times).
- Map apomorphic characters on the consensus tree. - Map apomorphic characters on the consensus tree.
@ -38,6 +38,10 @@ The TNT script follows MIT and part of script is from setk.run belonging to Salv
- `winclada.tre` can be transferred to the acceptable format for WinClada by tnt2winclada and the output file can be put into Winclada with your tnt matrix file `filename` for mapping apomorphic characters and homoplasy. - `winclada.tre` can be transferred to the acceptable format for WinClada by tnt2winclada and the output file can be put into Winclada with your tnt matrix file `filename` for mapping apomorphic characters and homoplasy.
## Cite
Cite this script is mandatory, list me (Guoyi Zhang) in your Acknowledgements is recommended.
# TNT2WinClada # TNT2WinClada
``` ```
@ -76,3 +80,5 @@ cl /EHsc tnt2winclada.cpp
``` ```
tnt2winclada -i ${input_file} -o ${output_file} tnt2winclada -i ${input_file} -o ${output_file}
``` ```
Interactive commands are also available.