From 73139aca73d433b82f66b37b0b287170087694b0 Mon Sep 17 00:00:00 2001 From: Kuoi Date: Mon, 17 Jul 2023 06:31:26 +0800 Subject: [PATCH] polish: readme give more details --- README.md | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index efb0496..f1765d3 100644 --- a/README.md +++ b/README.md @@ -14,11 +14,11 @@ The TNT script follows MIT and part of script is from setk.run belonging to Salv - Estimate implied weighting K value. -- Search trees via TBR Mult and Xmult. +- Search trees via TBR Mult (1000 times) and Xmult (use random sectorial searches, produce 1,000 hits to best length and stop, 10 cycles of drifting, ratchet and fusing). - Perform Strict consensus. -- Calculate Relative Bremer support, jackknifing, and bootstrap. +- Calculate Relative Bremer support, jackknifing (1,000 times), and bootstrap (1,000 times). - Map apomorphic characters on the consensus tree. @@ -38,6 +38,10 @@ The TNT script follows MIT and part of script is from setk.run belonging to Salv - `winclada.tre` can be transferred to the acceptable format for WinClada by tnt2winclada and the output file can be put into Winclada with your tnt matrix file `filename` for mapping apomorphic characters and homoplasy. +## Cite + +Cite this script is mandatory, list me (Guoyi Zhang) in your Acknowledgements is recommended. + # TNT2WinClada ``` @@ -76,3 +80,5 @@ cl /EHsc tnt2winclada.cpp ``` tnt2winclada -i ${input_file} -o ${output_file} ``` + +Interactive commands are also available.