TNT_Script/README.md

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# TNT Script used by Guoyi
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These scripts follow MIT except for setk.run which belongs to Salvador Arias (Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).
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## Usage
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### Method1
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- OS: Arch Linux;
- `tnt run guoyi.run file.tnt`, `file.tnt` is your data;
- Type `;` and enter;
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### Method2
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- Replace `%1` with your filename;
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- Run `tnt p guoyi.run` directly;
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## Options
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- `trees.tre`, `bt.tre` are trees with taxaname;
- `trees_no.tre`, `bt_no.tre` are trees without taxaname which can be put into Winclada with the `file.tnt`;
- `majority` can be replaced by `nelsen`;
- `boot` can be replaced by `jack`;