118 lines
2.0 KiB
Makefile
118 lines
2.0 KiB
Makefile
#
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# Makefile for ted (trace editor) - Alpha fork
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#
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#
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# Turning on the AUTO_CLIP switch allows ted to automatically
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# select a left (using the -enzyme option or the .enzyme in the
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# Xted file) and right cutoff on your sequence (using 2 out of
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# 5 N's)
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#
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# Turning on the SAVE_EDITS switch allows the user to maintain
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# copies of their edits, i.e. when you open up ted on a file
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# that you have already edited, the old edits show up in the
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# ted edit window. The user may also call up any of their
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# past editing sessions.
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#
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# Turning on the DEF_OUT switch makes
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# trace_name.seq the default output file name
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#
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# Turning on the QUAL_CODE switch enables LaDeana's trace quality
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# clipping code.
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#
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# Turning on the QUAL_CHECK switch (at the same time as QUAL_CODE)
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# enables the overall trace quality check.
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#
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#SWITCHES = -DAUTO_CLIP -DDEF_OUT -DSAVE_EDITS -DQUAL_CODE -DQUAL_CHECK
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SWITCHES = -DAUTO_CLIP -DQUAL_CODE -DQUAL_CHECK
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#
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# Programs made by this makefile
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#
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PROGS = ted autoted
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#
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# Where the wild things are
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#
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SRC = .
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#
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# Compiler - debug on
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#
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CC= cc
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INCLUDES = -I$(SRC)
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CFLAGS= -g $(SWITCHES) $(INCLUDES)
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LIBS= -lXaw -lXt -lXmu -lXext -lX11
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#
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LD= cc
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LDFLAGS= -g
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#
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# Object files
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#
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TEDOBJS=\
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ted.o\
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dialogues.o\
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seq.o\
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seqIOPlain.o\
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seqIOABI.o\
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help.o\
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display.o\
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traceDisplay.o\
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basesDisplay.o\
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Graph.o\
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seqIOEdit.o\
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seqIOALF.o\
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seqIOSCF.o\
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seqOutput.o\
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opp.o\
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info.o\
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fpoint.o\
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mach-io.o\
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seqRead.o\
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traceType.o\
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match.o
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AUTOTEDOBJS=\
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autoted.o\
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seq.o\
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seqIOPlain.o\
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seqIOABI.o\
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seqIOEdit.o\
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seqIOALF.o\
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seqIOSCF.o\
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seqOutput.o\
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opp.o\
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traceType.o\
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fpoint.o\
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mach-io.o\
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match.o\
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seqRead.o
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#
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# Linking
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#
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ted: $(TEDOBJS)
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$(LD) $(LDFLAGS) -o $@ $(TEDOBJS) $(LIBS)
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autoted: $(AUTOTEDOBJS)
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$(LD) $(LDFLAGS) -o $@ $(AUTOTEDOBJS) $(LIBS)
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#
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# Files requiring simple C compilation (thing.c -> thing.o)
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#
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%.o : $(SRC)/%.c
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$(CC) $(CFLAGS) -c $<
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#
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# Special dependencies
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#
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clean:
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rm -f ted $(TEDOBJS) *~ *.aux *.log *.bbl *.blg *.dvi *.ps
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all: $(PROGS)
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