597 lines
7.7 KiB
Plaintext
597 lines
7.7 KiB
Plaintext
# Makefile for staden X programs (Alpha OSF/1.2 version)
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# ------------------------------------------------------
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# This makefile generates the following staden programs which
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# run under xterm (normal, `N') and those which run directly under X.
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NPROGS= mep nip pip dap sap sip splitp1 splitp2 splitp3 gip sethelp convert_project rep lip sapf nipf vep
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LPROGS= nipl pipl sipl
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XPROGS= xmep xnip xpip xdap xsap xsip
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PROGS= $(NPROGS) $(LPROGS) $(XPROGS)
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#
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# ``Interesting'' suffices that make needs to know about
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#
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.SUFFIXES: .a $(SUFFIXES)
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#
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# Where the wild things are
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#
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SRC=.
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TEDSRC=$(SRC)/../ted
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MISCSRC=$(SRC)/../Misc
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MISCBIN=$(MISCSRC)
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INCLUDES= -I$(SRC) -I$(TEDSRC) -I$(MISCSRC)
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#
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# Compilers and flags
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#
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CC= cc
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CFLAGS= -g $(INCLUDES)
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F77= gfortran
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FFLAGS= -g -fdec -C
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FLIBS= -lfor -lutil -lUfor -lots -lFutil -lm -lfor -lutil -lUfor -lots -lFutil
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XLIBS= -lXaw -lXt -lXmu -lXext -lX11 -ldnet_stub
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LFLAGS= $(FLIBS)
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XLFLAGS= $(FLIBS) $(XLIBS)
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LD = gfortran
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CLD = cc
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LDFLAGS = -g # Comment out for faster linking when debugging
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#
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# Sequence library handling routines
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#
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SEQLIB=\
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seqlibsubs.o
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#
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# The C objects, needed by every X program
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#
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CCORE=\
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postscript.o\
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Graph.o\
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plotLog.o\
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help.o\
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dialogues.o\
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userfacecom.o\
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helpnmenu.o\
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xmenu.o\
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FtoC.o\
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mcspec.o\
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locks.o
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COBJS=\
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main.o\
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$(CCORE)
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XDAPCOBJS=\
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xdapmain.o\
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$(CCORE)
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#
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# Common objects, needed by every program
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#
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COMMONOBJSB=\
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fmain.o\
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seeme-dec.o\
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nxspec.o\
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userface.o\
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userfacecom.o\
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nxhelpmenu.o\
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helpnmenu.o\
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FtoC.o\
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subs89.a
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COMMONOBJS=\
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$(COMMONOBJSB)\
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postscript.o
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SCOMMONOBJS=\
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$(COMMONOBJSB)
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XCOMMONOBJS=\
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seeme-dec.o\
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xspec.o\
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subs89.a\
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$(COBJS)
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XDAPCOMMONOBJS=\
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seeme-dec.o\
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xspec.o\
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subs89.a\
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$(XDAPCOBJS)
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#
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# Building the programs
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# This should be just a linking phase because all of the object
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# files and library files are generated using implicit rules.
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# We use the fortran compiler to do linking.
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#
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GIP=\
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gip.o
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GIPOBJS=\
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$(GIP)\
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$(SCOMMONOBJS)
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gip: $(GIPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(GIPOBJS) $(LFLAGS)
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LIP=\
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lip.o
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LIPOBJS=\
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$(LIP)\
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$(SEQLIB)\
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$(COMMONOBJS)
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lip: $(LIPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(LIPOBJS) $(LFLAGS)
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MEP=\
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mep.o\
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mepsub.o\
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asubs89.a\
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plot92.a
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MEPOBJS=\
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$(MEP)\
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$(COMMONOBJS)\
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pl4010.o
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XMEPOBJS=\
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$(MEP)\
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$(XCOMMONOBJS)\
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plX.o\
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textOutput.o
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mep: $(MEPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(MEPOBJS) $(LFLAGS)
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xmep: $(XMEPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XMEPOBJS) $(XLFLAGS)
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NIP=\
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nip.o\
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patternn.a\
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patternnc.a\
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anals89.a\
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asubs89.a\
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plot92.a \
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$(SEQLIB)
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NIPOBJS=\
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$(NIP)\
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$(COMMONOBJS)\
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pl4010.o
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XNIPOBJS=\
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$(NIP)\
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$(XCOMMONOBJS)\
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plX.o\
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textOutput.o
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nip: $(NIPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(NIPOBJS) $(LFLAGS)
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xnip: $(XNIPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XNIPOBJS) $(XLFLAGS)
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NIPL=\
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nipl.o\
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patternnc.a\
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anals89.a\
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asubs89.a\
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$(SEQLIB)
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NIPLOBJS=\
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$(NIPL)\
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$(SCOMMONOBJS)
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nipl: $(NIPLOBJS)
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$(LD) $(LDFLAGS) -o $@ $(NIPLOBJS) $(LFLAGS)
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NIPF=\
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nipf.o\
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asubs89.a\
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plot92.a
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NIPFOBJS=\
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$(NIPF)\
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$(COMMONOBJS)\
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pl4010.o
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nipf: $(NIPFOBJS)
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$(LD) $(LDFLAGS) -o $@ $(NIPFOBJS) $(LFLAGS)
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PIP=\
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pip.o\
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analps89.a\
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patternp.a\
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patternpc.a\
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asubs89.a\
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plot92.a\
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$(SEQLIB)
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PIPOBJS=\
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$(PIP)\
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$(COMMONOBJS)\
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pl4010.o
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XPIPOBJS=\
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$(PIP)\
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$(XCOMMONOBJS)\
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plX.o\
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textOutput.o
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pip: $(PIPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(PIPOBJS) $(LFLAGS)
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xpip:$(XPIPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XPIPOBJS) $(XLFLAGS)
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PIPL=\
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pipl.o\
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patternpc.a\
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analps89.a\
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asubs89.a\
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$(SEQLIB)
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PIPLOBJS=\
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$(PIPL)\
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$(SCOMMONOBJS)
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pipl: $(PIPLOBJS)
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$(LD) $(LDFLAGS) -o $@ $(PIPLOBJS) $(LFLAGS)
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#
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# Trace manager objects
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#
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STDTEDFILES=\
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seq.o\
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seqIOABI.o\
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seqIOALF.o\
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seqIOSCF.o\
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seqIOPlain.o\
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opp.o\
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fpoint.o\
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mach-io.o
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TMANOBJS=\
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tman_main.o\
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tman_display.o\
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tman_traceDisplay.o\
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tman_basesDisplay.o\
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tman_context.o\
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tman_gadgets.o\
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$(STDTEDFILES)
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# Some versions of X11R4 may have a bug in SmeLine.c
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XHACK=\
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SmeLine.o
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EDITOR=\
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$(XHACK)\
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xsapConEdit.o\
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contigEditor.o\
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edUtils.o\
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undo.o\
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Sheet.o\
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select.o\
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extend.o\
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searchUtils.o\
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edMenu.o\
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trans.o\
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$(MISCBIN)/misc.a
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TAGEDITOR=\
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tagEditor.o\
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tagdbparse.o\
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tagU2.o\
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tagU1.o
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DAP=\
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dap.o\
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dbsysnew.o\
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dbsyscommon.o\
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asubs89.a\
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plot92.a
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DAPOBJS=\
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$(DAP)\
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$(COMMONOBJS)\
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pl4010.o\
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conEdit.o\
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tagU2.o
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XDAPOBJS=\
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$(DAP)\
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$(XDAPCOMMONOBJS)\
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plX.o\
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textOutput.o\
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$(EDITOR)\
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$(TMANOBJS)\
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$(TAGEDITOR)
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dap: $(DAPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(DAPOBJS) $(LFLAGS)
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xdap: $(XDAPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XDAPOBJS) $(XLFLAGS)
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convert_project: cvt.o
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$(CC) $(CFLAGS) -o $@ cvt.o
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SAP=\
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sap.o\
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dbsyscommon.o\
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dbsysold.o\
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asubs89.a\
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plot92.a
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SAPOBJS=\
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$(SAP)\
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$(COMMONOBJS)\
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pl4010.o
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XSAPOBJS=\
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$(SAP)\
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$(XCOMMONOBJS)\
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plX.o\
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textOutput.o
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sap: $(SAPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(SAPOBJS) $(LFLAGS)
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xsap: $(XSAPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XSAPOBJS) $(XLFLAGS)
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SAPF=\
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sapf.o\
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dbsyscommon.o\
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dbsysold.o\
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asubs89.a\
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plot92.a
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SAPFOBJS=\
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$(SAPF)\
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sapmen.o\
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$(COMMONOBJS)\
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pl4010.o
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sapf: $(SAPFOBJS)
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$(LD) $(LDFLAGS) -o $@ $(SAPFOBJS) $(LFLAGS)
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SIP=\
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sip.o\
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dias89.a\
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plot92.a\
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$(SEQLIB)
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SIPOBJS=\
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$(SIP)\
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$(COMMONOBJS)\
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pl4010.o
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XSIPOBJS=\
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$(SIP)\
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$(XCOMMONOBJS)\
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plX.o\
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textOutput.o
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sip: $(SIPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(SIPOBJS) $(LFLAGS)
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xsip: $(XSIPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(XSIPOBJS) $(XLFLAGS)
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SIPL=\
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sipl.o\
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dias89.a\
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$(SEQLIB)
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SIPLOBJS=\
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$(SIPL)\
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$(SCOMMONOBJS)
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sipl: $(SIPLOBJS)
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$(LD) $(LDFLAGS) -o $@ $(SIPLOBJS) $(LFLAGS)
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SETHELP=\
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sethelp.o
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SETHELPOBJS=\
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$(SETHELP)
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sethelp: $(SETHELPOBJS)
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$(CLD) $(LDFLAGS) -o $@ $(SETHELPOBJS) $(LFLAGS)
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SPLITP1=\
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splitp1.o
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SPLITP1OBJS=\
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$(SPLITP1)\
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$(SCOMMONOBJS)
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splitp1: $(SPLITP1OBJS)
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$(LD) $(LDFLAGS) -o $@ $(SPLITP1OBJS) $(LFLAGS)
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SPLITP2=\
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splitp2.o
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SPLITP2OBJS=\
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$(SPLITP2)\
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$(SCOMMONOBJS)
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splitp2: $(SPLITP2OBJS)
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$(LD) $(LDFLAGS) -o $@ $(SPLITP2OBJS) $(LFLAGS)
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SPLITP3=\
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splitp3.o
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SPLITP3OBJS=\
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$(SPLITP3)\
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$(SCOMMONOBJS)
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splitp3: $(SPLITP3OBJS)
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$(LD) $(LDFLAGS) -o $@ $(SPLITP3OBJS) $(LFLAGS)
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REP=\
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rep.o\
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dias89.a\
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subs89.a
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REPOBJS=\
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$(REP)\
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$(COMMONOBJS)
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rep: $(REPOBJS)
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$(F77) $(LDFLAGS) -o $@ $(REPOBJS) $(LFLAGS)
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VEP=\
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vep.o\
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dias89.a\
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subs89.a
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VEPOBJS=\
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$(VEP)\
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$(SCOMMONOBJS)
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vep: $(VEPOBJS)
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$(LD) $(LDFLAGS) -o $@ $(VEPOBJS) $(LFLAGS)
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#
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# Special dependencies
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#
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#
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#
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# Files requiring simple C compilation (thing.c -> thing.o)
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#
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%.o: $(SRC)/%.c
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$(CC) $(CFLAGS) -c $<
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%.o: $(TEDSRC)/%.c
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$(CC) $(CFLAGS) -c $<
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# Files requiring simple FORTRAN compilation (thing.f -> thing.o)
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#
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%.o: $(SRC)/%.f
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$(F77) $(FFLAGS) -c $<
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#
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# The UNIX library (archive) mechanism is fairly weak so the following
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# procedure is used to generate libraries.
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# * split the source file up into files which each contain
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# a single function or subroutine
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# * compile each of those files
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# * insert the object files individually into the library
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# Each library is built by using a temporary directory.
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# The fortran compilations must be done sequentially in order to
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# avoid filling up the (small on this machine) /tmp directory
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# with compiler debugging information.
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#
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#%.a: $(SRC)/%.f
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# BINDIR=`pwd`; \
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# cd $(SRC); \
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# SRCDIR=`pwd`; \
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# TMPDIR=/tmp/staden$$$$; \
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# if test ! -d $$TMPDIR; \
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# then mkdir $$TMPDIR; \
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# fi; \
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# cd $$TMPDIR; \
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# rm -f *.f *.o; \
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# fsplit $$SRCDIR/`expr $< : '.*/\(.*\)' \| $<`; \
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# $(F77) $(FFLAGS) -c *.f; \
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# rm *.f; \
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# rm -f $$BINDIR/$@; \
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# ar rcv $$BINDIR/$@ *.o; \
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# ranlib $$BINDIR/$@; \
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# rm *.o; \
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# cd $$BINDIR; \
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# rm -r $$TMPDIR
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%.a: $(SRC)/%.f
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$(F77) $(FFLAGS) -c *.f; \
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ar rcv *.o
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#.f.a:
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# $(F77) $(FFLAGS) -c $<
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# ar rcv $@ $*.o
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# ranlib $@
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# rm $*.o
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all: $(PROGS)
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nprogs: $(NPROGS)
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xprogs: $(XPROGS)
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lprogs: $(LPROGS)
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clean:
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rm -f $(PROGS) *.a *.o *~
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lint:
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lint -Q -Nn5000 -DNOSTRDUP $(INCLUDES) *.c
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