54 lines
1.1 KiB
Tcsh
54 lines
1.1 KiB
Tcsh
#! /bin/csh -f
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#
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# script to make a free text index for the swissprot newdata library
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#
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echo "swissfreetext.script Version 1.0"
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echo ""
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set RM = "/bin/rm -f"
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set SORT = sort
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set UNIQ = uniq
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#
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# LIBFILE is the name you've given to the library file
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#
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set LIBFILE = seq.dat
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set WORDS = stopwords
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# get free text
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emblfreetext $LIBFILE freetext.list
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if ( $status ) goto abort
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# sort on words, remove dumplicates, remove stopwords, resort on entry name
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${SORT} -b +1 freetext.list | ${UNIQ} | excludewords ${WORDS} | ${SORT} >! freetext.sorted
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if ( $status ) goto abort
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${RM} freetext.list
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# include entry numbers in the file
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freetext2 freetext.sorted freetext.entry
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if ( $status ) goto abort
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${RM} freetext.sorted
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# sort on text
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${SORT} -b +2 freetext.entry >! freetext.sorted2
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if ( $status ) goto abort
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${RM} freetext.entry
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# create the index
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freetext4 freetext.sorted2 freetext.trg freetext.hit
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if ( $status ) goto abort
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${RM} freetext.sorted2
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echo "Completion successful"
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echo ""
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exit 0
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#
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# Abort
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#
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abort:
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echo "swissfreetext.script: aborting due to serious error"
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exit 2
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