77 lines
1.8 KiB
Tcsh
77 lines
1.8 KiB
Tcsh
#! /bin/csh -f
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#
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# script to make author index for the genbank library
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#
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# NOTE only active for primate file
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#
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echo "genbauthor.script Version 1.0"
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set RM = "echo /bin/rm -f"
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set SORT = "sort -T tmp"
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#
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#
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#
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set WORDS = $STADENROOT/seqman/stopwords
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genbauthor gbpri.seq gbpri.list
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if ( $status ) goto abort
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genbauthor gbrod.seq gbrod.list
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if ( $status ) goto abort
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genbauthor gbmam.seq gbmam.list
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if ( $status ) goto abort
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genbauthor gbvrt.seq gbvrt.list
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if ( $status ) goto abort
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genbauthor gbinv.seq gbinv.list
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if ( $status ) goto abort
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genbauthor gbpln.seq gbpln.list
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if ( $status ) goto abort
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genbauthor gborg.seq gborg.list
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if ( $status ) goto abort
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genbauthor gbbct.seq gbbct.list
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if ( $status ) goto abort
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genbauthor gbrna.seq gbrna.list
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if ( $status ) goto abort
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genbauthor gbvrl.seq gbvrl.list
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if ( $status ) goto abort
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genbauthor gbphg.seq gbphg.list
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if ( $status ) goto abort
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genbauthor gbsyn.seq gbsyn.list
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if ( $status ) goto abort
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genbauthor gbuna.seq gbuna.list
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if ( $status ) goto abort
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${SORT} -u gbpri.list gbrod.list gbmam.list gbvrt.list gbinv.list gbpln.list gborg.list gbbct.list gbrna.list gbvrl.list gbphg.list gbsyn.list gbuna.list >! author.sorted
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if ( $status ) goto abort
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${RM} gbpri.list gbrod.list gbmam.list gbvrt.list gbinv.list gbpln.list gborg.list gbbct.list gbrna.list gbvrl.list gbphg.list gbsyn.list gbuna.list
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# sort on entry name
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#${SORT} -u gbpri.list >! author.sorted
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#if ( $status ) goto abort
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#${RM} gbpri.list
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# include entry numbers in the file
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freetext2 author.sorted author.entry
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if ( $status ) goto abort
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${RM} author.sorted
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# sort on text
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${SORT} -b +2 author.entry >! author.sorted2
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if ( $status ) goto abort
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${RM} author.entry
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# create the index
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hitNtrg author.sorted2 author.trg author.hit 35
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if ( $status ) goto abort
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${RM} author.sorted2
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exit 0
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#
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# Abort
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#
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abort:
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echo "genbauthor.script: aborting due to serious error"
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exit 2
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