staden-lg/src/indexseqlibs/embluentryname.script

42 lines
676 B
Tcsh

#! /bin/csh -f
#
# script to create an entryname index for the embl newdata library
#
echo "emblentryname.script Version 1.0"
echo ""
set RM = "/bin/rm -f"
set SORT = sort
#
# LIBFILE is the name you've given to the library file
#
set LIBFILE = emseq.all
# get entry names
emblentryname1 $LIBFILE entry.list 1
if ( $status ) goto abort
# sort on entry names
${SORT} entry.list >! entry.sorted
if ( $status ) goto abort
${RM} entry.list
# create index file
entryname2 entry.sorted entrynam.idx
if ( $status ) goto abort
${RM} entry.sorted
echo "Completion successful"
echo ""
exit 0
#
# Abort
#
abort:
echo "emblentryname.script: aborting due to serious error"
exit 2