92 lines
1.7 KiB
Plaintext
92 lines
1.7 KiB
Plaintext
#
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# Makefile for expGetSeq - DEC Ultrix (mips) fork
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#
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#
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# Turning on the AUTO_CLIP switch allows ted to automatically
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# select a left (using the -enzyme option or the .enzyme in the
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# Xted file) and right cutoff on your sequence (using 2 out of
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# 5 N's)
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#
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# Turning on the SAVE_EDITS switch allows the user to maintain
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# copies of their edits, i.e. when you open up ted on a file
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# that you have already edited, the old edits show up in the
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# ted edit window. The user may also call up any of their
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# past editing sessions.
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#
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# Turning on the DEF_OUT switch makes
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# trace_name.seq the default output file name
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#
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# Turning on the QUAL_CODE switch enables LaDeana's trace quality
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# clipping code.
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#
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# Turning on the QUAL_CHECK switch (at the same time as QUAL_CODE)
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# enables the overall trace quality check.
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#
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#SWITCHES = -DAUTO_CLIP -DDEF_OUT -DSAVE_EDITS -DQUAL_CODE -DQUAL_CHECK
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SWITCHES = -DAUTO_CLIP -DQUAL_CODE
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#
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# Programs made by this makefile
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#
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PROGS = expGetSeq
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#
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# Where the wild things are
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#
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SRC = .
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TEDSRC = $(SRC)/../newted
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INCLUDES = -I/usr/include/mit -I$(SRC) -I$(TEDSRC)
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#
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# Compiler - debug on
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#
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CC= c89
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CFLAGS= -g -common $(SWITCHES) $(INCLUDES)
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#
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# Object files
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#
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OBJS=\
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getMCH.o\
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seq.o\
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seqIOPlain.o\
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seqIOABI.o\
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seqIOEdit.o\
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seqIOALF.o\
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seqIOSCF.o\
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opp.o\
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fpoint.o\
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match.o\
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mach-io.o\
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seqRead.o\
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traceType.o
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#
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# Linking
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#
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expGetSeq: $(OBJS)
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$(CC) $(CFLAGS) -o $@ $(OBJS) $(LIBS)
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#
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# Files requiring simple C compilation (thing.c -> thing.o)
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#
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%.o : %.c
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$(CC) $(CFLAGS) -c $<
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%.o : $(SRC)/%.c
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$(CC) $(CFLAGS) -c $<
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%.o : $(TEDSRC)/%.c
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$(CC) $(CFLAGS) -c $<
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#
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# Special dependencies
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#
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clean:
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rm -f $(PROGS) $(OBJS) *~ *.aux *.log *.bbl *.blg *.dvi *.ps
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all: $(PROGS)
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