54 lines
1004 B
Tcsh
54 lines
1004 B
Tcsh
#! /bin/csh -f
|
|
#
|
|
# script to make an accession number index for the pir library in codata format
|
|
#
|
|
|
|
echo "piraccession.script Version 1.1"
|
|
echo ""
|
|
|
|
set RM = "/bin/rm -f"
|
|
set SORT = sort
|
|
|
|
#
|
|
# LIBFILE is the name you've given to the library file
|
|
#
|
|
set LIBFILE1 = pir1.dat
|
|
set LIBFILE2 = pir2.dat
|
|
set LIBFILE3 = pir3.dat
|
|
|
|
piraccess1 $LIBFILE1 pir1.list
|
|
if ( $status ) goto abort
|
|
piraccess1 $LIBFILE2 pir2.list
|
|
if ( $status ) goto abort
|
|
piraccess2 $LIBFILE3 pir3.list
|
|
if ( $status ) goto abort
|
|
|
|
${SORT} pir1.list pir2.list pir3.list >! access.sorted
|
|
if ( $status ) goto abort
|
|
${RM} pir1.list pir2.list pir3.list
|
|
|
|
|
|
access2 access.sorted access.entry
|
|
if ( $status ) goto abort
|
|
${RM} access.sorted
|
|
|
|
${SORT} -b +1 access.entry >! access.sorted2
|
|
if ( $status ) goto abort
|
|
${RM} access.entry
|
|
|
|
access4 access.sorted2 acnum.trg acnum.hit
|
|
if ( $status ) goto abort
|
|
${RM} access.sorted2
|
|
|
|
echo "Completion successful"
|
|
echo ""
|
|
|
|
exit 0
|
|
|
|
#
|
|
# Abort
|
|
#
|
|
abort:
|
|
echo "piraccession.script: aborting due to serious error"
|
|
exit 2
|