69 lines
1.6 KiB
Tcsh
69 lines
1.6 KiB
Tcsh
#! /bin/csh -f
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#
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# script to make a title or brief index for the genbank library
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#
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# NOTE only active for primate file
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#
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echo "genbtitle.script Version 1.0"
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echo ""
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set RM = "echo /bin/rm -f"
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set SORT = "sort -T tmp"
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#
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#
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#
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genbtitle1 gbpri.seq gbpri.list
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if ( $status ) goto abort
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genbtitle1 gbrod.seq gbrod.list
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if ( $status ) goto abort
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genbtitle1 gbmam.seq gbmam.list
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if ( $status ) goto abort
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genbtitle1 gbvrt.seq gbvrt.list
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if ( $status ) goto abort
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genbtitle1 gbinv.seq gbinv.list
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if ( $status ) goto abort
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genbtitle1 gbpln.seq gbpln.list
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if ( $status ) goto abort
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genbtitle1 gborg.seq gborg.list
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if ( $status ) goto abort
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genbtitle1 gbbct.seq gbbct.list
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if ( $status ) goto abort
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genbtitle1 gbrna.seq gbrna.list
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if ( $status ) goto abort
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genbtitle1 gbvrl.seq gbvrl.list
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if ( $status ) goto abort
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genbtitle1 gbphg.seq gbphg.list
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if ( $status ) goto abort
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genbtitle1 gbsyn.seq gbsyn.list
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if ( $status ) goto abort
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genbtitle1 gbuna.seq gbuna.list
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if ( $status ) goto abort
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${SORT} gbpri.list gbrod.list gbmam.list gbvrt.list gbinv.list gbpln.list gborg.list gbbct.list gbrna.list gbvrl.list gbphg.list gbsyn.list gbuna.list >! title.sorted
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if ( $status ) goto abort
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${RM} gbpri.list gbrod.list gbmam.list gbvrt.list gbinv.list gbpln.list gborg.list gbbct.list gbrna.list gbvrl.list gbphg.list gbsyn.list gbuna.list
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#${SORT} gbpri.list >! title.sorted
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#if ( $status ) goto abort
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#${RM} gbpri.list
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title2 title.sorted brief.idx
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if ( $status ) goto abort
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${RM} title.sorted
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echo "Completion successful"
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echo ""
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exit 0
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#
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# Abort
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#
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abort:
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echo "genbtitle.script: aborting due to serious error"
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exit 2
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