33 lines
1.2 KiB
Text
33 lines
1.2 KiB
Text
|
Converting Sap Databases For Be Used With XDAP SD 10 July 1991
|
||
|
|
=======================================================================
|
||
|
|
|
||
|
|
The sequence assembly programmes dap and xdap are based on the programs
|
||
|
|
sap and xsap, with major modifications. For a concise summary of the
|
||
|
|
new features I refer you to Rodger and my paper, "A sequence assembly
|
||
|
|
and editing program for efficient management of large projects"
|
||
|
|
(Nucleic Acids Research, in press)
|
||
|
|
|
||
|
|
The need for storing extra information in project databases has
|
||
|
|
resulted in the creation of two files. For users who wish you use old
|
||
|
|
(sap) databases with xdap, additional files must be created to use all
|
||
|
|
the new features. The program 'convert_project' does this. It is
|
||
|
|
interactive, and asks you for names of relevant files, version numbers
|
||
|
|
etc. Here is a sample program dialogue:
|
||
|
|
|
||
|
|
|
||
|
|
% convert_project
|
||
|
|
Database conversion program
|
||
|
|
Converts *.RD? file to *.TG? and *.CC? files
|
||
|
|
|
||
|
|
Project name ? test
|
||
|
|
Version ? 0
|
||
|
|
Conversion completed.
|
||
|
|
|
||
|
|
|
||
|
|
Further, please ensure that the file TAGDB is in your project
|
||
|
|
directory. Copies can be found in $STADTABL. Alternatively ensure that
|
||
|
|
the environment TAGDB variable is set to $STADTABL/TAGDB
|
||
|
|
|
||
|
|
setenv TAGDB $STADTABL/TAGDB
|
||
|
|
|