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fix: April 2023 archlinux

This commit is contained in:
kuoi 2023-04-09 02:17:32 +08:00
parent a25316aa9e
commit 15feb1c6c9
4 changed files with 2341 additions and 2587 deletions
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2680
CORE/BuiltIn.c
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File diff suppressed because it is too large Load Diff

594
CORE/Genbank.c
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@ -1,10 +1,12 @@
#include <sys/time.h>
#include <stdio.h>
#include <malloc.h> #include <malloc.h>
#include <xview/xview.h> #include <stdio.h>
#include <sys/time.h>
#include <time.h>
#include <xview/panel.h> #include <xview/panel.h>
#include "menudefs.h" #include <xview/xview.h>
#include "defines.h" #include "defines.h"
#include "menudefs.h"
/* /*
Copyright (c) 1989-1990, University of Illinois board of trustees. All Copyright (c) 1989-1990, University of Illinois board of trustees. All
@ -19,223 +21,220 @@ Copyright (c) 1993, Steven Smith, all rights reserved.
*/ */
ReadGen(filename,dataset,type) ReadGen(filename, dataset, type) char *filename;
char *filename;
NA_Alignment *dataset; NA_Alignment *dataset;
int type; int type;
{ {
register int done = FALSE,len = 0, j=0; register int done = FALSE, len = 0, j = 0;
int count,IS_REALLY_AA = FALSE; int count, IS_REALLY_AA = FALSE;
char Inline[GBUFSIZ],c; char Inline[GBUFSIZ], c;
char *buffer,*gencomments = NULL,fields[8][GBUFSIZ]; char *buffer, *gencomments = NULL, fields[8][GBUFSIZ];
int buflen = 0,genclen = 0,curelem = 0,n = 0,flag = 0; int buflen = 0, genclen = 0, curelem = 0, n = 0, flag = 0;
int start_col = -1; int start_col = -1;
NA_Sequence *this_elem; NA_Sequence *this_elem;
FILE *file; FILE *file;
extern int Default_DNA_Trans[], Default_RNA_Trans[]; extern int Default_DNA_Trans[], Default_RNA_Trans[];
extern int Default_NA_RTrans[]; extern int Default_NA_RTrans[];
extern int Default_PROColor_LKUP[],Default_NAColor_LKUP[]; extern int Default_PROColor_LKUP[], Default_NAColor_LKUP[];
ErrorOut("No such file",file = fopen(filename,"r")); ErrorOut("No such file", file = fopen(filename, "r"));
for(;fgets(Inline,GBUFSIZ,file) != 0;) for (; fgets(Inline, GBUFSIZ, file) != 0;) {
{ if (Inline[strlen(Inline) - 1] == '\n')
if(Inline[strlen(Inline)-1] == '\n') Inline[strlen(Inline) - 1] = '\0';
Inline[strlen(Inline)-1] = '\0'; if (Find(Inline, "LOCUS")) {
if(Find(Inline,"LOCUS"))
{
curelem = dataset->numelements++; curelem = dataset->numelements++;
if(curelem == 0) if (curelem == 0) {
{ dataset->element = (NA_Sequence *)Calloc(
dataset->element=(NA_Sequence*) 5, sizeof(NA_Sequence));
Calloc(5,sizeof(NA_Sequence));
dataset->maxnumelements = 5; dataset->maxnumelements = 5;
} }
else if (curelem==dataset->maxnumelements) else if (curelem == dataset->maxnumelements) {
{
(dataset->maxnumelements) *= 2; (dataset->maxnumelements) *= 2;
dataset->element =(NA_Sequence*) dataset->element = (NA_Sequence *)Realloc(
Realloc(dataset->element, dataset->element, dataset->maxnumelements *
dataset->maxnumelements * sizeof(NA_Sequence)); sizeof(NA_Sequence));
} }
this_elem = &(dataset->element[curelem]); this_elem = &(dataset->element[curelem]);
n = sscanf(Inline,"%s %s %s %s %s %s %s %s", n = sscanf(Inline, "%s %s %s %s %s %s %s %s", fields[0],
fields[0],fields[1],fields[2],fields[3],fields[4], fields[1], fields[2], fields[3], fields[4],
fields[5],fields[6],fields[7]); fields[5], fields[6], fields[7]);
if(IS_REALLY_AA) if (IS_REALLY_AA) {
{ InitNASeq(this_elem, PROTEIN);
InitNASeq(this_elem,PROTEIN);
} }
else if(Find(Inline,"DNA")) else if (Find(Inline, "DNA")) {
{ InitNASeq(this_elem, DNA);
InitNASeq(this_elem,DNA);
} }
else if(Find(Inline,"RNA")) else if (Find(Inline, "RNA")) {
{ InitNASeq(this_elem, RNA);
InitNASeq(this_elem,RNA);
} }
else if(Find(Inline,"MASK")) else if (Find(Inline, "MASK")) {
{ InitNASeq(this_elem, MASK);
InitNASeq(this_elem,MASK);
} }
else if(Find(Inline,"TEXT")) else if (Find(Inline, "TEXT")) {
{ InitNASeq(this_elem, TEXT);
InitNASeq(this_elem,TEXT);
} }
else if(Find(Inline,"PROT")) else if (Find(Inline, "PROT")) {
{ InitNASeq(this_elem, PROTEIN);
InitNASeq(this_elem,PROTEIN);
} }
else else
InitNASeq(this_elem,DNA); InitNASeq(this_elem, DNA);
strncpy(this_elem->short_name,fields[1],31); strncpy(this_elem->short_name, fields[1], 31);
AsciiTime(&(this_elem->t_stamp.origin),fields[n-1]); AsciiTime(&(this_elem->t_stamp.origin), fields[n - 1]);
this_elem->attr = DEFAULT_X_ATTR; this_elem->attr = DEFAULT_X_ATTR;
if( Find(Inline, "Circular") ) if (Find(Inline, "Circular"))
this_elem->attr |= IS_CIRCULAR; this_elem->attr |= IS_CIRCULAR;
gencomments = NULL; gencomments = NULL;
genclen = 0; genclen = 0;
} }
else if(Find(Inline,"DEFINITION")) else if (Find(Inline, "DEFINITION"))
strncpy(this_elem->description,&(Inline[12]),79); strncpy(this_elem->description, &(Inline[12]), 79);
else if(Find(Inline,"AUTHOR")) else if (Find(Inline, "AUTHOR"))
strncpy(this_elem->authority,&(Inline[12]),79); strncpy(this_elem->authority, &(Inline[12]), 79);
else if(Find(Inline," ORGANISM")) else if (Find(Inline, " ORGANISM"))
strncpy(this_elem->seq_name,&(Inline[12]),79); strncpy(this_elem->seq_name, &(Inline[12]), 79);
else if(Find(Inline,"ACCESSION")) else if (Find(Inline, "ACCESSION"))
strncpy(this_elem->id,&(Inline[12]),79); strncpy(this_elem->id, &(Inline[12]), 79);
else if(Find(Inline,"ORIGIN")) else if (Find(Inline, "ORIGIN")) {
{
done = FALSE; done = FALSE;
len = 0; len = 0;
for(;done == FALSE && fgets(Inline,GBUFSIZ,file) != 0;) for (; done == FALSE &&
{ fgets(Inline, GBUFSIZ, file) != 0;) {
if(Inline[0] != '/') if (Inline[0] != '/') {
{ if (buflen == 0) {
if(buflen == 0)
{
buflen = GBUFSIZ; buflen = GBUFSIZ;
buffer = Calloc(sizeof(char) , buffer = Calloc(sizeof(char),
buflen); buflen);
} }
else if (len+strlen(Inline) >= buflen) else if (len + strlen(Inline) >=
{ buflen) {
buflen += GBUFSIZ; buflen += GBUFSIZ;
buffer = Realloc(buffer, buffer = Realloc(
sizeof(char)*buflen); buffer,
for(j=buflen-GBUFSIZ sizeof(char) * buflen);
;j<buflen;j++) for (j = buflen - GBUFSIZ;
j < buflen; j++)
buffer[j] = '\0'; buffer[j] = '\0';
} }
/* /*
* Search for the fist column of data (whitespace-number-whitespace)data * Search for the fist column of
*/ *data
if(start_col == -1) *(whitespace-number-whitespace)data
{ */
for(start_col=0; Inline[start_col] == ' ' || if (start_col == -1) {
Inline[start_col] == '\t';start_col++); for (start_col = 0;
Inline[start_col] == ' ' ||
Inline[start_col] == '\t';
start_col++)
;
for(start_col++;strchr("1234567890", for (start_col++;
Inline[start_col]) != NULL;start_col++); strchr(
"1234567890",
for(start_col++; Inline[start_col] == ' ' || Inline[start_col]) !=
Inline[start_col] == '\t';start_col++); NULL;
start_col++)
;
for (start_col++;
Inline[start_col] == ' ' ||
Inline[start_col] == '\t';
start_col++)
;
} }
for(j=start_col;(c = Inline[j]) != '\0';j++) for (j = start_col;
{ (c = Inline[j]) != '\0'; j++) {
if((c != '\n') && if ((c != '\n') &&
((j-start_col + 1) % 11 !=0)) ((j - start_col + 1) % 11 !=
0))
buffer[len++] = c; buffer[len++] = c;
} }
} }
else else {
{ AppendNA(buffer, len,
AppendNA(buffer,len,&(dataset-> &(dataset->element[curelem]));
element[curelem])); for (j = 0; j < len; j++)
for(j=0;j<len;j++)
buffer[j] = '\0'; buffer[j] = '\0';
len = 0; len = 0;
done = TRUE; done = TRUE;
dataset->element[curelem].comments dataset->element[curelem].comments =
= gencomments; gencomments;
dataset->element[curelem].comments_len= dataset->element[curelem].comments_len =
genclen - 1; genclen - 1;
dataset->element[curelem]. dataset->element[curelem]
comments_maxlen = genclen; .comments_maxlen = genclen;
gencomments = NULL; gencomments = NULL;
genclen = 0; genclen = 0;
} }
} }
/* /*
* Test if sequence should be converted by the translation table * Test if sequence should be converted by
* If it looks like a protein... *the translation table If it looks like a protein...
*/ */
if(dataset->element[curelem].rmatrix && if (dataset->element[curelem].rmatrix &&
IS_REALLY_AA == FALSE) IS_REALLY_AA == FALSE) {
{ IS_REALLY_AA = CheckType(
IS_REALLY_AA = CheckType(dataset->element[curelem]. dataset->element[curelem].sequence,
sequence,dataset->element[curelem].seqlen); dataset->element[curelem].seqlen);
if(IS_REALLY_AA == FALSE) if (IS_REALLY_AA == FALSE)
Ascii2NA(dataset->element[curelem].sequence, Ascii2NA(
dataset->element[curelem].sequence,
dataset->element[curelem].seqlen, dataset->element[curelem].seqlen,
dataset->element[curelem].rmatrix); dataset->element[curelem].rmatrix);
else else
/* /*
* Force the sequence to be AA * Force the sequence to be AA
*/ */
{ {
dataset->element[curelem].elementtype = PROTEIN; dataset->element[curelem].elementtype =
dataset->element[curelem].rmatrix = NULL; PROTEIN;
dataset->element[curelem].tmatrix = NULL; dataset->element[curelem].rmatrix =
NULL;
dataset->element[curelem].tmatrix =
NULL;
dataset->element[curelem].col_lut = dataset->element[curelem].col_lut =
Default_PROColor_LKUP; Default_PROColor_LKUP;
} }
} }
} }
else if (Find(Inline,"ZZZZZ")) else if (Find(Inline, "ZZZZZ")) {
{
Cfree(gencomments); Cfree(gencomments);
genclen = 0; genclen = 0;
} }
else else {
{ if (gencomments == NULL) {
if (gencomments == NULL)
{
gencomments = String(Inline); gencomments = String(Inline);
genclen = strlen(gencomments)+1; genclen = strlen(gencomments) + 1;
} }
else else {
{ genclen += strlen(Inline) + 1;
genclen += strlen(Inline)+1; gencomments = Realloc(gencomments,
gencomments = Realloc(gencomments,genclen * genclen * sizeof(char));
sizeof(char)); strncat(gencomments, Inline, GBUFSIZ);
strncat(gencomments,Inline,GBUFSIZ); strncat(gencomments, "\n", GBUFSIZ);
strncat(gencomments,"\n",GBUFSIZ);
} }
} }
} }
Cfree(buffer); Cfree(buffer);
fclose(file); fclose(file);
for(j=0;j<dataset->numelements;j++) for (j = 0; j < dataset->numelements; j++)
dataset->maxlen = MAX(dataset->maxlen, dataset->maxlen =
dataset->element[j].seqlen+dataset->element[j].offset); MAX(dataset->maxlen, dataset->element[j].seqlen +
dataset->element[j].offset);
return; return;
} }
typedef struct mya { typedef struct mya {
int yy; int yy;
int mm; int mm;
@ -245,7 +244,7 @@ typedef struct mya {
int sc; int sc;
} sA; } sA;
AsciiTime(sA *a,char *asciitime) AsciiTime(sA *a, char *asciitime)
{ {
int j; int j;
char temp[GBUFSIZ]; char temp[GBUFSIZ];
@ -254,186 +253,229 @@ AsciiTime(sA *a,char *asciitime)
a->dd = 0; a->dd = 0;
a->yy = 0; a->yy = 0;
a->mm = 0; a->mm = 0;
sscanf(asciitime,"%d%5c%d",&(a->dd),temp,&(a->yy)); sscanf(asciitime, "%d%5c%d", &(a->dd), temp, &(a->yy));
temp[5] = '\0'; temp[5] = '\0';
for(j=0;j<12;j++) for (j = 0; j < 12; j++)
if(strcmp(temp,month[j]) == 0) if (strcmp(temp, month[j]) == 0) a->mm = j + 1;
a->mm = j+1; if (a->dd < 0 || a->dd > 31 || a->yy < 0 || a->mm > 11) SetTime(a);
if(a->dd <0 || a->dd > 31 || a->yy < 0 || a->mm > 11)
SetTime(a);
return; return;
} }
WriteGen(aln, filename, method, maskable) NA_Alignment *aln;
WriteGen(aln,filename,method,maskable)
NA_Alignment *aln;
char *filename; char *filename;
int method,maskable; int method, maskable;
{ {
int i,j,k,mask = -1; int i, j, k, mask = -1;
FILE *file; FILE *file;
NA_Sequence *this_elem; NA_Sequence *this_elem;
extern char month[12][6]; extern char month[12][6];
char c; char c;
if(aln == NULL) if (aln == NULL) return;
return; if (aln->na_ddata == NULL) return;
if(aln->na_ddata == NULL)
return;
file = fopen(filename,"w"); file = fopen(filename, "w");
if(file == NULL) if (file == NULL) {
{
Warning("Cannot open file for output"); Warning("Cannot open file for output");
return(1); return (1);
} }
if(maskable && method != SELECT_REGION) if (maskable && method != SELECT_REGION)
for(j=0;j<aln->numelements;j++) for (j = 0; j < aln->numelements; j++)
if(aln->element[j].elementtype == MASK && if (aln->element[j].elementtype == MASK &&
aln->element[j].selected) aln->element[j].selected)
mask = j; mask = j;
for(j=0;j<aln->numelements;j++) for (j = 0; j < aln->numelements; j++) {
{ if ((aln->element[j].selected && j != mask &&
if((aln->element[j].selected && j!=mask && method != SELECT_REGION) method != SELECT_REGION) ||
||(aln->element[j].subselected && method == SELECT_REGION) (aln->element[j].subselected && method == SELECT_REGION) ||
|| (method == ALL)) (method == ALL)) {
{
this_elem = &(aln->element[j]); this_elem = &(aln->element[j]);
fprintf(file, fprintf(
file,
"LOCUS %10s%8d bp %4s %10s %2d%5s%4d\n", "LOCUS %10s%8d bp %4s %10s %2d%5s%4d\n",
this_elem->short_name,this_elem->seqlen+this_elem->offset, this_elem->short_name,
(this_elem->elementtype == DNA) ? "DNA": this_elem->seqlen + this_elem->offset,
(this_elem->elementtype ==RNA)?"RNA": (this_elem->elementtype == DNA) ? "DNA"
(this_elem->elementtype == MASK)?"MASK": : (this_elem->elementtype == RNA) ? "RNA"
(this_elem->elementtype == PROTEIN)?"PROT":"TEXT", : (this_elem->elementtype == MASK) ? "MASK"
this_elem->attr & IS_CIRCULAR?"Circular":"", : (this_elem->elementtype == PROTEIN) ? "PROT"
: "TEXT",
this_elem->attr & IS_CIRCULAR ? "Circular" : "",
this_elem->t_stamp.origin.dd, this_elem->t_stamp.origin.dd,
month[this_elem->t_stamp.origin.mm-1], month[this_elem->t_stamp.origin.mm - 1],
this_elem->t_stamp.origin.yy>1900?this_elem->t_stamp.origin.yy: this_elem->t_stamp.origin.yy > 1900
this_elem->t_stamp.origin.yy+1900); ? this_elem->t_stamp.origin.yy
if(this_elem->description[0]) : this_elem->t_stamp.origin.yy + 1900);
fprintf(file,"DEFINITION %s\n",this_elem->description); if (this_elem->description[0])
if(this_elem->seq_name[0]) fprintf(file, "DEFINITION %s\n",
fprintf(file," ORGANISM %s\n",this_elem->seq_name); this_elem->description);
if(this_elem->id[0]) if (this_elem->seq_name[0])
fprintf(file," ACCESSION %s\n",this_elem->id); fprintf(file, " ORGANISM %s\n",
if(this_elem->authority[0]) this_elem->seq_name);
fprintf(file," AUTHORS %s\n",this_elem->authority); if (this_elem->id[0])
if(this_elem->comments) fprintf(file, " ACCESSION %s\n",
fprintf(file,"%s\n",this_elem->comments); this_elem->id);
fprintf(file,"ORIGIN"); if (this_elem->authority[0])
if(this_elem->tmatrix) fprintf(file, " AUTHORS %s\n",
{ this_elem->authority);
if(mask == -1) if (this_elem->comments)
{ fprintf(file, "%s\n", this_elem->comments);
for(i=0,k=0;k<this_elem->seqlen+this_elem->offset;k++) fprintf(file, "ORIGIN");
{ if (this_elem->tmatrix) {
if(method == SELECT_REGION) if (mask == -1) {
{ for (i = 0, k = 0;
if(aln->selection_mask[k] == '1') k < this_elem->seqlen +
{ this_elem->offset;
if(i%60 == 0) k++) {
fprintf(file,"\n%9d",i+1); if (method == SELECT_REGION) {
if(i%10 == 0) if (aln->selection_mask
fprintf(file," "); [k] == '1') {
fprintf(file,"%c",this_elem->tmatrix if (i % 60 == 0)
[getelem(this_elem,k)]); fprintf(
file,
"\n"
"%9"
"d",
i + 1);
if (i % 10 == 0)
fprintf(
file,
" ");
fprintf(
file, "%c",
this_elem->tmatrix
[getelem(
this_elem,
k)]);
i++; i++;
} }
} }
else else {
{ if (i % 60 == 0)
if(i%60 == 0) fprintf(file,
fprintf(file,"\n%9d",i+1); "\n%9d",
if(i%10 == 0) i + 1);
fprintf(file," "); if (i % 10 == 0)
fprintf(file,"%c",this_elem->tmatrix fprintf(file,
[getelem(this_elem,k)]); " ");
fprintf(
file, "%c",
this_elem->tmatrix
[getelem(
this_elem,
k)]);
i++; i++;
} }
} }
} }
else else {
{ for (k = 0; k < this_elem->seqlen +
for(k=0;k<this_elem->seqlen+this_elem->offset;k++) this_elem->offset;
{ k++) {
c =(char)getelem(&(aln->element[mask]),k); c = (char)getelem(
if(c != '0' && c!= '-') &(aln->element[mask]), k);
{ if (c != '0' && c != '-') {
if(k%60 == 0) if (k % 60 == 0)
fprintf(file,"\n%9d",k+1); fprintf(file,
if(k%10 == 0) "\n%9d",
fprintf(file," "); k + 1);
fprintf(file,"%c",this_elem->tmatrix if (k % 10 == 0)
[getelem(this_elem,k)]); fprintf(file,
" ");
fprintf(
file, "%c",
this_elem->tmatrix
[getelem(
this_elem,
k)]);
} }
} }
} }
} }
else else {
{ if (mask == -1) {
if(mask == -1) for (i = 0, k = 0;
{ k < this_elem->seqlen +
for(i=0,k=0;k<this_elem->seqlen+this_elem->offset;k++) this_elem->offset;
{ k++) {
if(method == SELECT_REGION) if (method == SELECT_REGION) {
{ if (aln->selection_mask
if(aln->selection_mask[k] == '1') [k] == '1') {
{ if (i % 60 == 0)
if(i%60 == 0) fprintf(
fprintf(file,"\n%9d",i+1); file,
if(i%10 == 0) "\n"
fprintf(file," "); "%9"
fprintf(file,"%c", getelem(this_elem,k)); "d",
i + 1);
if (i % 10 == 0)
fprintf(
file,
" ");
fprintf(
file, "%c",
getelem(
this_elem,
k));
i++; i++;
} }
} }
else else {
{ if (i % 60 == 0)
if(i%60 == 0) fprintf(file,
fprintf(file,"\n%9d",i+1); "\n%9d",
if(i%10 == 0) i + 1);
fprintf(file," "); if (i % 10 == 0)
fprintf(file,"%c",getelem(this_elem,k)); fprintf(file,
" ");
fprintf(
file, "%c",
getelem(this_elem,
k));
i++; i++;
} }
} }
} }
else else {
{ for (k = 0; k < this_elem->seqlen +
for(k=0;k<this_elem->seqlen+this_elem->offset;k++) this_elem->offset;
{ k++) {
c =(char)getelem(&(aln->element[mask]),k); c = (char)getelem(
if(c != '0' && c!= '-') &(aln->element[mask]), k);
{ if (c != '0' && c != '-') {
if(k%60 == 0) if (k % 60 == 0)
fprintf(file,"\n%9d",k+1); fprintf(file,
if(k%10 == 0) "\n%9d",
fprintf(file," "); k + 1);
fprintf(file,"%c",getelem(this_elem,k)); if (k % 10 == 0)
fprintf(file,
" ");
fprintf(
file, "%c",
getelem(this_elem,
k));
} }
} }
} }
} }
fprintf(file,"\n//\n"); fprintf(file, "\n//\n");
} }
} }
fclose(file); fclose(file);
return; return;
} }
SetTime(sA *a) SetTime(sA *a)
{ {
struct tm *tim,*localtime(); struct tm *tim, *localtime();
long clock; long clock;
clock = time(0); clock = time(0);
tim = localtime(&clock); tim = localtime(&clock);
a->yy = tim->tm_year; a->yy = tim->tm_year;
a->mm = tim->tm_mon+1; a->mm = tim->tm_mon + 1;
a->dd = tim->tm_mday; a->dd = tim->tm_mday;
a->hr = tim->tm_hour; a->hr = tim->tm_hour;
a->mn = tim->tm_min; a->mn = tim->tm_min;
@ -442,24 +484,20 @@ SetTime(sA *a)
} }
/* /*
* CheckType: Check base composition to see if the sequence * CheckType: Check base composition to see if the sequence
* appears to be an amino acid sequence. If it is, pass back * appears to be an amino acid sequence. If it is, pass back
* TRUE, else FALSE. * TRUE, else FALSE.
*/ */
CheckType(seq,len) CheckType(seq, len) char *seq;
char *seq;
int len; int len;
{ {
int j, count1 = 0, count2 = 0;
int j,count1 = 0,count2 = 0; for (j = 0; j < len; j++)
if (((seq[j] | 32) < 'z') && ((seq[j] | 32) > 'a')) {
for(j=0;j<len;j++)
if(((seq[j]|32) < 'z') && ((seq[j]|32) > 'a'))
{
count1++; count1++;
if(index("ACGTUNacgtun",seq[j]) == NULL) if (index("ACGTUNacgtun", seq[j]) == NULL) count2++;
count2++;
} }
return( (count2 > count1/4)?TRUE:FALSE); return ((count2 > count1 / 4) ? TRUE : FALSE);
} }

954
CORE/HGLfile.c
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File diff suppressed because it is too large Load Diff

700
CORE/ParseMenu.c
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@ -1,9 +1,10 @@
#include <stdio.h>
#include <malloc.h> #include <malloc.h>
#include <xview/xview.h> #include <stdio.h>
#include <xview/panel.h> #include <xview/panel.h>
#include "menudefs.h" #include <xview/xview.h>
#include "defines.h" #include "defines.h"
#include "menudefs.h"
/* /*
ParseMenus(): Read in the menu config file, and generate the internal ParseMenus(): Read in the menu config file, and generate the internal
@ -24,106 +25,98 @@ int num_menus;
ParseMenu() ParseMenu()
{ {
int j,curmenu = -1,curitem = 0; int j, curmenu = -1, curitem = 0;
int curchoice = 0 ,curarg = 0,curinput = 0, curoutput = 0; int curchoice = 0, curarg = 0, curinput = 0, curoutput = 0;
char Inline[GBUFSIZ],temp[GBUFSIZ],head[GBUFSIZ]; char Inline[GBUFSIZ], temp[GBUFSIZ], head[GBUFSIZ];
char tail[GBUFSIZ],*home; char tail[GBUFSIZ], *home;
Gmenu *thismenu; Gmenu *thismenu;
GmenuItem *thisitem; GmenuItem *thisitem;
GmenuItemArg *thisarg; GmenuItemArg *thisarg;
GfileFormat *thisinput,*thisoutput; GfileFormat *thisinput, *thisoutput;
FILE *file; FILE *file;
char *resize; char *resize;
/* /*
* Open the menu configuration file ".GDEmenus" * Open the menu configuration file ".GDEmenus"
* First search the local directory, then the home directory. * First search the local directory, then the home directory.
*/ */
file=fopen(".GDEmenus","r"); file = fopen(".GDEmenus", "r");
if(file == NULL) if (file == NULL) {
{ home = (char *)getenv("HOME");
home = (char*)getenv("HOME"); strcpy(temp, home);
strcpy(temp,home); strcat(temp, "/.GDEmenus");
strcat(temp,"/.GDEmenus");
file=fopen(temp,"r"); file = fopen(temp, "r");
if(file == NULL) if (file == NULL) {
{ home = (char *)getenv("GDE_HELP_DIR");
home = (char*)getenv("GDE_HELP_DIR"); if (home != NULL) {
if(home != NULL) strcpy(temp, home);
{ strcat(temp, "/.GDEmenus");
strcpy(temp,home); file = fopen(temp, "r");
strcat(temp,"/.GDEmenus");
file=fopen(temp,"r");
} }
if(file == NULL) if (file == NULL)
Error( Error(
".GDEmenus file not in the home, local, or $GDE_HELP_DIR directory"); ".GDEmenus file not in the home, local, or "
"$GDE_HELP_DIR directory");
} }
} }
/* /*
* Read the .GDEmenus file, and assemble an internal representation * Read the .GDEmenus file, and assemble an internal representation
* of the menu/menu-item hierarchy. * of the menu/menu-item hierarchy.
*/ */
for(;getline(file,Inline) != EOF;) for (; gde_getline(file, Inline) != EOF;) {
{ /*
/* * menu: chooses menu to use
* menu: chooses menu to use */
*/ if (Inline[0] == '#')
if(Inline[0] == '#'); ;
else if(Find(Inline,"menu:")) else if (Find(Inline, "menu:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp);
curmenu = -1; curmenu = -1;
for(j=0;j<num_menus;j++) for (j = 0; j < num_menus; j++)
if(Find(temp,menu[j].label)) if (Find(temp, menu[j].label)) curmenu = j;
curmenu=j; /*
/* * If menu not found, make a new one
* If menu not found, make a new one */
*/ if (curmenu == -1) {
if(curmenu == -1)
{
curmenu = num_menus++; curmenu = num_menus++;
thismenu = &menu[curmenu]; thismenu = &menu[curmenu];
thismenu->label = thismenu->label = (char *)calloc(
(char*)calloc(strlen(temp)+1,sizeof(char)); strlen(temp) + 1, sizeof(char));
if(thismenu->label == NULL) if (thismenu->label == NULL) Error("Calloc");
Error("Calloc"); (void)strcpy(thismenu->label, temp);
(void)strcpy(thismenu->label,temp); thismenu->numitems = 0;
thismenu->numitems = 0;
} }
} }
/* /*
* item: chooses menu item to use * item: chooses menu item to use
*/ */
else if(Find(Inline,"item:")) else if (Find(Inline, "item:")) {
{
curarg = -1; curarg = -1;
curinput = -1; curinput = -1;
curoutput = -1; curoutput = -1;
crop(Inline,head,temp); crop(Inline, head, temp);
curitem = thismenu->numitems++; curitem = thismenu->numitems++;
/* /*
* Resize the item list for this menu (add one item); * Resize the item list for this menu (add one
*/ *item);
if(curitem == 0) */
resize = (char*)calloc(1,sizeof(GmenuItem)); if (curitem == 0)
resize = (char *)calloc(1, sizeof(GmenuItem));
else else
resize = realloc(thismenu->item, resize = realloc(
thismenu -> numitems*sizeof(GmenuItem) ); thismenu->item,
thismenu->numitems * sizeof(GmenuItem));
if(resize == NULL) if (resize == NULL) Error("Calloc");
Error ("Calloc"); thismenu->item = (GmenuItem *)resize;
thismenu->item =(GmenuItem*)resize;
thisitem = &(thismenu->item[curitem]); thisitem = &(thismenu->item[curitem]);
thisitem->label = (char*)calloc(strlen(temp)+1, thisitem->label =
sizeof(char)); (char *)calloc(strlen(temp) + 1, sizeof(char));
thisitem->meta = '\0'; thisitem->meta = '\0';
thisitem->numinputs = 0; thisitem->numinputs = 0;
thisitem->numoutputs = 0; thisitem->numoutputs = 0;
@ -131,74 +124,66 @@ ParseMenu()
thisitem->X = 0; thisitem->X = 0;
thisitem->help = NULL; thisitem->help = NULL;
/* /*
* Create new item * Create new item
*/ */
if(thisitem->label == NULL) if (thisitem->label == NULL) Error("Calloc");
Error("Calloc"); (void)strcpy(thisitem->label, temp);
(void)strcpy(thisitem->label,temp);
} }
/* /*
* itemmethod: generic command line generated by this item * itemmethod: generic command line generated by this item
*/ */
else if(Find(Inline,"itemmethod:")) else if (Find(Inline, "itemmethod:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); thisitem->method =
thisitem->method = (char *)calloc(strlen(temp) + 1, sizeof(char));
(char*)calloc(strlen(temp)+1,sizeof(char)); if (thisitem->method == NULL) Error("Calloc");
if(thisitem->method == NULL) (void)strcpy(thisitem->method, temp);
Error("Calloc");
(void)strcpy(thisitem->method,temp);
} }
/* /*
* Help file * Help file
*/ */
else if(Find(Inline,"itemhelp:")) else if (Find(Inline, "itemhelp:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp);
thisitem->help = thisitem->help =
(char*)calloc(strlen(temp)+1,sizeof(char)); (char *)calloc(strlen(temp) + 1, sizeof(char));
if(thisitem->method == NULL) if (thisitem->method == NULL) Error("Calloc");
Error("Calloc"); (void)strcpy(thisitem->help, temp);
(void)strcpy(thisitem->help,temp);
} }
/* /*
* Meta key equiv * Meta key equiv
*/ */
else if(Find(Inline,"itemmeta:")) else if (Find(Inline, "itemmeta:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); thisitem->meta = temp[0];
thisitem->meta = temp[0];
} }
/* /*
* arg: defines the symbol for a command line arguement. * arg: defines the symbol for a command line arguement.
* this is used for substitution into the itemmethod * this is used for substitution into the
* definition. *itemmethod definition.
*/ */
else if(Find(Inline,"arg:")) else if (Find(Inline, "arg:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); curarg = thisitem->numargs++;
curarg=thisitem->numargs++; if (curarg == 0)
if(curarg == 0) resize =
resize = (char*)calloc(1,sizeof(GmenuItemArg)); (char *)calloc(1, sizeof(GmenuItemArg));
else else
resize = realloc(thisitem->arg, resize = realloc(
thisitem->numargs*sizeof(GmenuItemArg) ); thisitem->arg,
thisitem->numargs * sizeof(GmenuItemArg));
if(resize == NULL) if (resize == NULL) Error("arg: Realloc");
Error("arg: Realloc");
(thisitem->arg) = (GmenuItemArg*)resize; (thisitem->arg) = (GmenuItemArg *)resize;
thisarg = &(thisitem->arg[curarg]); thisarg = &(thisitem->arg[curarg]);
thisarg->symbol = (char*)calloc(strlen(temp)+1, thisarg->symbol =
sizeof(char)); (char *)calloc(strlen(temp) + 1, sizeof(char));
if(thisarg->symbol == NULL) if (thisarg->symbol == NULL) Error("Calloc");
Error("Calloc"); (void)strcpy(thisarg->symbol, temp);
(void)strcpy(thisarg->symbol,temp);
thisarg->optional = FALSE; thisarg->optional = FALSE;
thisarg->type = 0; thisarg->type = 0;
thisarg->min = 0; thisarg->min = 0;
@ -208,153 +193,145 @@ ParseMenu()
thisarg->textvalue = NULL; thisarg->textvalue = NULL;
thisarg->value = 0; thisarg->value = 0;
} }
/* /*
* argtype: Defines the type of argument (menu,chooser, text, slider) * argtype: Defines the type of argument (menu,chooser,
*/ *text, slider)
else if(Find(Inline,"argtype:")) */
{ else if (Find(Inline, "argtype:")) {
crop(Inline,head,temp); crop(Inline, head, temp);
if(strcmp(temp,"text")==0) if (strcmp(temp, "text") == 0) {
{ thisarg->type = TEXTFIELD;
thisarg->type=TEXTFIELD;
thisarg->textvalue = thisarg->textvalue =
(char*)calloc(GBUFSIZ,sizeof(char)); (char *)calloc(GBUFSIZ, sizeof(char));
if(thisarg->textvalue == NULL) if (thisarg->textvalue == NULL) Error("Calloc");
Error("Calloc");
} }
else if(strcmp(temp,"choice_list")==0) else if (strcmp(temp, "choice_list") == 0)
thisarg->type=CHOICE_LIST; thisarg->type = CHOICE_LIST;
else if(strcmp(temp,"choice_menu")==0) else if (strcmp(temp, "choice_menu") == 0)
thisarg->type=CHOICE_MENU; thisarg->type = CHOICE_MENU;
else if(strcmp(temp,"chooser")==0) else if (strcmp(temp, "chooser") == 0)
thisarg->type=CHOOSER; thisarg->type = CHOOSER;
else if(strcmp(temp,"slider")==0) else if (strcmp(temp, "slider") == 0)
thisarg->type=SLIDER; thisarg->type = SLIDER;
else else
Error(sprintf(head,"Unknown argtype %s",temp)); Error(
sprintf(head, "Unknown argtype %s", temp));
} }
/* /*
* argtext: The default text value of the symbol. * argtext: The default text value of the symbol.
* $argument is replaced by this value if it is not * $argument is replaced by this value if it is not
* changed in the dialog box by the user. * changed in the dialog box by the user.
*/ */
else if(Find(Inline,"argtext:")) else if (Find(Inline, "argtext:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); (void)strcpy(thisarg->textvalue, temp);
(void)strcpy(thisarg->textvalue,temp);
} }
/* /*
* arglabel: Text label displayed in the dialog box for * arglabel: Text label displayed in the dialog box for
* this argument. It should be a discriptive label. * this argument. It should be a discriptive
*/ *label.
else if(Find(Inline,"arglabel:")) */
{ else if (Find(Inline, "arglabel:")) {
crop(Inline,head,temp); crop(Inline, head, temp);
thisarg->label=(char*)calloc(strlen(temp)+1, thisarg->label =
sizeof(char)); (char *)calloc(strlen(temp) + 1, sizeof(char));
if(thisarg->label == NULL) if (thisarg->label == NULL) Error("Calloc");
Error("Calloc"); (void)strcpy(thisarg->label, temp);
(void)strcpy(thisarg->label,temp);
} }
/* /*
* Argument choice values use the following notation: * Argument choice values use the following notation:
* *
* argchoice:Displayed value:Method * argchoice:Displayed value:Method
* *
* Where "Displayed value" is the label displayed in the dialog box * Where "Displayed value" is the label displayed in the
* and "Method" is the value passed back on the command line. *dialog box and "Method" is the value passed back on the
*/ *command line.
else if(Find(Inline,"argchoice:")) */
{ else if (Find(Inline, "argchoice:")) {
crop(Inline,head,temp); crop(Inline, head, temp);
crop(temp,head,tail); crop(temp, head, tail);
curchoice = thisarg->numchoices++; curchoice = thisarg->numchoices++;
if(curchoice == 0) if (curchoice == 0)
resize = (char*)calloc(1,sizeof(GargChoice)); resize = (char *)calloc(1, sizeof(GargChoice));
else else
resize = realloc(thisarg->choice, resize = realloc(
thisarg->numchoices*sizeof(GargChoice)); thisarg->choice,
thisarg->numchoices * sizeof(GargChoice));
if(resize == NULL) if (resize == NULL) Error("argchoice: Realloc");
Error("argchoice: Realloc"); thisarg->choice = (GargChoice *)resize;
thisarg->choice = (GargChoice*)resize;
(thisarg->choice[curchoice].label) = NULL; (thisarg->choice[curchoice].label) = NULL;
(thisarg->choice[curchoice].method) = NULL; (thisarg->choice[curchoice].method) = NULL;
(thisarg->choice[curchoice].label) = (thisarg->choice[curchoice].label) =
(char*)calloc(strlen(head)+1,sizeof(char)); (char *)calloc(strlen(head) + 1, sizeof(char));
(thisarg->choice[curchoice].method) = (thisarg->choice[curchoice].method) =
(char*)calloc(strlen(tail)+1,sizeof(char)); (char *)calloc(strlen(tail) + 1, sizeof(char));
if(thisarg->choice[curchoice].method == NULL || if (thisarg->choice[curchoice].method == NULL ||
thisarg->choice[curchoice].label == NULL) thisarg->choice[curchoice].label == NULL)
Error("Calloc"); Error("Calloc");
(void)strcpy(thisarg->choice[curchoice].label,head); (void)strcpy(thisarg->choice[curchoice].label, head);
(void)strcpy(thisarg->choice[curchoice].method,tail); (void)strcpy(thisarg->choice[curchoice].method, tail);
} }
/* /*
* argmin: Minimum value for a slider * argmin: Minimum value for a slider
*/ */
else if(Find(Inline,"argmin:")) else if (Find(Inline, "argmin:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); (void)sscanf(temp, "%d", &(thisarg->min));
(void)sscanf(temp,"%d",&(thisarg->min));
} }
/* /*
* argmax: Maximum value for a slider * argmax: Maximum value for a slider
*/ */
else if(Find(Inline,"argmax:")) else if (Find(Inline, "argmax:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); (void)sscanf(temp, "%d", &(thisarg->max));
(void)sscanf(temp,"%d",&(thisarg->max));
} }
/* /*
* argmethod: Command line flag associated with this argument. * argmethod: Command line flag associated with this
* Replaces argument in itemmethod description. *argument. Replaces argument in itemmethod description.
*/ */
else if(Find(Inline,"argmethod:")) else if (Find(Inline, "argmethod:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); thisarg->method = (char *)calloc(GBUFSIZ, strlen(temp));
thisarg->method = (char*)calloc(GBUFSIZ,strlen(temp)); if (thisarg->method == NULL) Error("Calloc");
if(thisarg->method == NULL) (void)strcpy(thisarg->method, tail);
Error("Calloc");
(void)strcpy(thisarg->method,tail);
} }
/* /*
* argvalue: default value for a slider * argvalue: default value for a slider
*/ */
else if(Find(Inline,"argvalue:")) else if (Find(Inline, "argvalue:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp); if (thisarg->type == TEXT)
if(thisarg->type == TEXT) strcpy(thisarg->textvalue, temp);
strcpy(thisarg->textvalue,temp);
else else
(void)sscanf(temp,"%d",&(thisarg->value)); (void)sscanf(temp, "%d", &(thisarg->value));
} }
/* /*
* argoptional: Flag specifying that an arguement is optional * argoptional: Flag specifying that an arguement is
*/ *optional
else if(Find(Inline,"argoptional:")) */
else if (Find(Inline, "argoptional:"))
thisarg->optional = TRUE; thisarg->optional = TRUE;
/* /*
* in: Input file description * in: Input file description
*/ */
else if(Find(Inline,"in:")) else if (Find(Inline, "in:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp);
curinput = (thisitem->numinputs)++; curinput = (thisitem->numinputs)++;
if(curinput == 0) if (curinput == 0)
resize = (char*)calloc(1,sizeof(GfileFormat)); resize = (char *)calloc(1, sizeof(GfileFormat));
else else
resize = realloc(thisitem->input, resize = realloc(thisitem->input,
(thisitem->numinputs)*sizeof(GfileFormat)); (thisitem->numinputs) *
sizeof(GfileFormat));
if(resize == NULL) if (resize == NULL) Error("in: Realloc");
Error("in: Realloc"); thisitem->input = (GfileFormat *)resize;
thisitem->input = (GfileFormat*)resize;
thisinput = &(thisitem->input)[curinput]; thisinput = &(thisitem->input)[curinput];
thisinput->save = FALSE; thisinput->save = FALSE;
thisinput->overwrite = FALSE; thisinput->overwrite = FALSE;
@ -365,202 +342,181 @@ ParseMenu()
thisinput->select = SELECTED; thisinput->select = SELECTED;
} }
/* /*
* out: Output file description * out: Output file description
*/ */
else if(Find(Inline,"out:")) else if (Find(Inline, "out:")) {
{ crop(Inline, head, temp);
crop(Inline,head,temp);
curoutput = (thisitem->numoutputs)++; curoutput = (thisitem->numoutputs)++;
if(curoutput == 0) if (curoutput == 0)
resize = (char*)calloc(1,sizeof(GfileFormat)); resize = (char *)calloc(1, sizeof(GfileFormat));
else else
resize = realloc(thisitem->output, resize = realloc(thisitem->output,
(thisitem->numoutputs)*sizeof(GfileFormat)); (thisitem->numoutputs) *
sizeof(GfileFormat));
if(resize == NULL) if (resize == NULL) Error("out: Realloc");
Error("out: Realloc"); thisitem->output = (GfileFormat *)resize;
thisitem->output = (GfileFormat*)resize;
thisoutput = &(thisitem->output)[curoutput]; thisoutput = &(thisitem->output)[curoutput];
thisitem->output = (GfileFormat*)resize; thisitem->output = (GfileFormat *)resize;
thisoutput = &(thisitem->output)[curoutput]; thisoutput = &(thisitem->output)[curoutput];
thisoutput->save = FALSE; thisoutput->save = FALSE;
thisoutput->overwrite = FALSE; thisoutput->overwrite = FALSE;
thisoutput->format = 0; thisoutput->format = 0;
thisoutput->symbol= String(temp); thisoutput->symbol = String(temp);
thisoutput->name = NULL; thisoutput->name = NULL;
} }
else if(Find(Inline,"informat:")) else if (Find(Inline, "informat:")) {
{ if (thisinput == NULL) Error("Problem with .GDEmenus");
if(thisinput == NULL) crop(Inline, head, tail);
Error("Problem with .GDEmenus"); if (Find(tail, "genbank"))
crop(Inline,head,tail);
if(Find(tail,"genbank"))
thisinput->format = GENBANK; thisinput->format = GENBANK;
else if(Find(tail,"gde")) else if (Find(tail, "gde"))
thisinput->format = GDE; thisinput->format = GDE;
else if(Find(tail,"na_flat")) else if (Find(tail, "na_flat"))
thisinput->format = NA_FLAT; thisinput->format = NA_FLAT;
else if(Find(tail,"colormask")) else if (Find(tail, "colormask"))
thisinput->format = COLORMASK; thisinput->format = COLORMASK;
else if(Find(tail,"flat")) else if (Find(tail, "flat"))
thisinput->format = NA_FLAT; thisinput->format = NA_FLAT;
else if(Find(tail,"status")) else if (Find(tail, "status"))
thisinput->format = STATUS_FILE; thisinput->format = STATUS_FILE;
else fprintf(stderr,"Warning, unknown file format %s\n" else
,tail); fprintf(stderr,
"Warning, unknown file format %s\n",
tail);
} }
else if(Find(Inline,"insave:")) else if (Find(Inline, "insave:")) {
{ if (thisinput == NULL) Error("Problem with .GDEmenus");
if(thisinput == NULL)
Error("Problem with .GDEmenus");
thisinput->save = TRUE; thisinput->save = TRUE;
} }
else if(Find(Inline,"inselect:")) else if (Find(Inline, "inselect:")) {
{ if (thisinput == NULL) Error("Problem with .GDEmenus");
if(thisinput == NULL) crop(Inline, head, tail);
Error("Problem with .GDEmenus"); if (Find(tail, "one"))
crop(Inline,head,tail); thisinput->select = SELECT_ONE;
if(Find(tail,"one")) else if (Find(tail, "region"))
thisinput->select = SELECT_ONE; thisinput->select = SELECT_REGION;
else if(Find(tail,"region")) else if (Find(tail, "all"))
thisinput->select = SELECT_REGION; thisinput->select = ALL;
else if(Find(tail,"all"))
thisinput->select = ALL;
} }
else if(Find(Inline,"inmask:")) else if (Find(Inline, "inmask:")) {
{ if (thisinput == NULL) Error("Problem with .GDEmenus");
if(thisinput == NULL)
Error("Problem with .GDEmenus");
thisinput->maskable = TRUE; thisinput->maskable = TRUE;
} }
else if(Find(Inline,"outformat:")) else if (Find(Inline, "outformat:")) {
{ if (thisoutput == NULL) Error("Problem with .GDEmenus");
if(thisoutput == NULL) crop(Inline, head, tail);
Error("Problem with .GDEmenus"); if (Find(tail, "genbank"))
crop(Inline,head,tail); thisoutput->format = GENBANK;
if(Find(tail,"genbank")) else if (Find(tail, "gde"))
thisoutput->format = GENBANK;
else if(Find(tail,"gde"))
thisoutput->format = GDE; thisoutput->format = GDE;
else if(Find(tail,"na_flat")) else if (Find(tail, "na_flat"))
thisoutput->format = NA_FLAT; thisoutput->format = NA_FLAT;
else if(Find(tail,"flat")) else if (Find(tail, "flat"))
thisoutput->format = NA_FLAT; thisoutput->format = NA_FLAT;
else if(Find(tail,"status")) else if (Find(tail, "status"))
thisoutput->format = STATUS_FILE; thisoutput->format = STATUS_FILE;
else if(Find(tail,"colormask")) else if (Find(tail, "colormask"))
thisoutput->format = COLORMASK; thisoutput->format = COLORMASK;
else fprintf(stderr,"Warning, unknown file format %s\n" else
,tail); fprintf(stderr,
"Warning, unknown file format %s\n",
tail);
} }
else if(Find(Inline,"outsave:")) else if (Find(Inline, "outsave:")) {
{ if (thisoutput == NULL) Error("Problem with .GDEmenus");
if(thisoutput == NULL)
Error("Problem with .GDEmenus");
thisoutput->save = TRUE; thisoutput->save = TRUE;
} }
else if(Find(Inline,"outoverwrite:")) else if (Find(Inline, "outoverwrite:")) {
{ if (thisoutput == NULL) Error("Problem with .GDEmenus");
if(thisoutput == NULL)
Error("Problem with .GDEmenus");
thisoutput->overwrite = TRUE; thisoutput->overwrite = TRUE;
} }
} }
return; return;
} }
/* /*
Find(): Search the target string for the given key Find(): Search the target string for the given key
*/ */
Find(target,key) Find(target, key) char *key, *target;
char *key,*target;
{ {
int i,j,len1,dif,flag = FALSE; int i, j, len1, dif, flag = FALSE;
dif = (strlen(target)) - (len1 = strlen(key)) +1; dif = (strlen(target)) - (len1 = strlen(key)) + 1;
if(len1>0) if (len1 > 0)
for(j=0;j<dif && flag == FALSE;j++) for (j = 0; j < dif && flag == FALSE; j++) {
{
flag = TRUE; flag = TRUE;
for(i=0;i<len1 && flag;i++) for (i = 0; i < len1 && flag; i++)
flag = (key[i] == target[i+j])?TRUE:FALSE; flag = (key[i] == target[i + j]) ? TRUE : FALSE;
} }
return(flag); return (flag);
} }
Find2(target, key) char *key, *target;
Find2(target,key)
char *key,*target;
/* /*
* Like find, but returns the index of the leftmost * Like find, but returns the index of the leftmost
* occurence, and -1 if not found. * occurence, and -1 if not found.
*/ */
{ {
int i,j,len1,dif,flag = FALSE; int i, j, len1, dif, flag = FALSE;
dif = (strlen(target)) - (len1 = strlen(key)) +1; dif = (strlen(target)) - (len1 = strlen(key)) + 1;
if(len1>0) if (len1 > 0)
for(j=0;j<dif && flag == FALSE;j++) for (j = 0; j < dif && flag == FALSE; j++) {
{
flag = TRUE; flag = TRUE;
for(i=0;i<len1 && flag;i++) for (i = 0; i < len1 && flag; i++)
flag = (key[i] == target[i+j])?TRUE:FALSE; flag = (key[i] == target[i + j]) ? TRUE : FALSE;
} }
return(flag?j-1:-1); return (flag ? j - 1 : -1);
} }
Error(msg) char *msg;
Error(msg)
char *msg;
{ {
(void)fprintf(stderr,"%s\n",msg); (void)fprintf(stderr, "%s\n", msg);
exit(1); exit(1);
} }
int gde_getline(file, string)
int getline(file,string)
FILE *file; FILE *file;
char string[]; char string[];
{ {
char c; char c;
int i; int i;
for(i=0;((c=getc(file))!='\n') && (c!=EOF);i++) for (i = 0; ((c = getc(file)) != '\n') && (c != EOF); i++)
string[i]=c; string[i] = c;
string[i] = '\0'; string[i] = '\0';
if (i==0 && c==EOF) return (EOF); if (i == 0 && c == EOF)
else return (0); return (EOF);
else
return (0);
} }
/* /*
Crop(): Crop():
Split "this:that[:the_other]" Split "this:that[:the_other]"
into: "this" and "that[:the_other]" into: "this" and "that[:the_other]"
*/ */
crop(input,head,tail) crop(input, head, tail) char input[], head[], tail[];
char input[],head[],tail[];
{ {
/* /*
* Crop needs to be fixed so that whitespace is compressed off the end * Crop needs to be fixed so that whitespace is compressed off the
* of tail *end of tail
*/ */
int offset,end,i,j,length; int offset, end, i, j, length;
length=strlen(input); length = strlen(input);
for(offset=0;offset<length && input[offset] != ':';offset++) for (offset = 0; offset < length && input[offset] != ':'; offset++)
head[offset]=input[offset]; head[offset] = input[offset];
head[offset++] = '\0'; head[offset++] = '\0';
for(;offset<length && input[offset] == ' ';offset++); for (; offset < length && input[offset] == ' '; offset++)
for(end=length-1;input[end] ==' ' && end>offset;end--); ;
for (end = length - 1; input[end] == ' ' && end > offset; end--)
;
for(j=0,i=offset;i<=end;i++,j++) for (j = 0, i = offset; i <= end; i++, j++) tail[j] = input[i];
tail[j]=input[i];
tail[j] = '\0'; tail[j] = '\0';
return; return;
} }