71 lines
1.5 KiB
C
71 lines
1.5 KiB
C
|
#include "Flatio.c"
|
||
|
|
#define WIDTH 50
|
||
|
|
|
||
|
|
main()
|
||
|
|
{
|
||
|
|
struct data_format data[10000];
|
||
|
|
int i,j,k,numseqs,maxlen = 0,minlen=999999999;
|
||
|
|
int lines_printed;
|
||
|
|
int len[1000];
|
||
|
|
char a,b;
|
||
|
|
|
||
|
|
numseqs = ReadFlat(stdin,data,10000);
|
||
|
|
if(numseqs == 0)
|
||
|
|
exit(1);
|
||
|
|
|
||
|
|
for(k=0;k<numseqs;k++)
|
||
|
|
{
|
||
|
|
minlen = MIN(minlen,data[k].offset);
|
||
|
|
maxlen = MAX(maxlen,data[j].length+data[k].offset);
|
||
|
|
}
|
||
|
|
|
||
|
|
for(j=minlen;j<maxlen;j+=WIDTH)
|
||
|
|
{
|
||
|
|
lines_printed = FALSE;
|
||
|
|
for (i=0;i<numseqs;i++)
|
||
|
|
{
|
||
|
|
data[i].name[19] = '\0';
|
||
|
|
if(((data[i].offset > j+WIDTH) ||
|
||
|
|
(data[i].offset+data[i].length<j)));
|
||
|
|
else
|
||
|
|
{
|
||
|
|
lines_printed = TRUE;
|
||
|
|
printf("\n%20s%5d ", data[i].name,
|
||
|
|
indx(j,&(data[i])));
|
||
|
|
for(k=j;k<j+WIDTH;k++)
|
||
|
|
{
|
||
|
|
if((k<data[i].length+data[i].offset)
|
||
|
|
&& (k>=data[i].offset))
|
||
|
|
putchar(data[i].nuc[k-data[i].offset]);
|
||
|
|
else putchar(' ');
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
if(lines_printed)
|
||
|
|
{
|
||
|
|
printf("\n |---------|---------|---------|---------|---------\n");
|
||
|
|
printf(" %6d %6d %6d %6d %6d\n\n",j+1,j+11,j+21,j+31,j+41);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
putchar('\n');
|
||
|
|
exit(0);
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
int indx(pos,seq)
|
||
|
|
int pos;
|
||
|
|
struct data_format *seq;
|
||
|
|
{
|
||
|
|
int j,count=0;
|
||
|
|
if(pos < seq->offset)
|
||
|
|
return (0);
|
||
|
|
if(pos>seq->offset+seq->length)
|
||
|
|
pos = seq->offset+seq->length;
|
||
|
|
pos -= seq->offset;
|
||
|
|
for(j=0;j<pos;j++)
|
||
|
|
if(seq->nuc[j] != '-')
|
||
|
|
if(seq->nuc[j] != '~')
|
||
|
|
count++;
|
||
|
|
return (count);
|
||
|
|
}
|