TNT Script for Maximum Parsimony Analysis https://doi.org/10.5281/zenodo.8431529
Find a file
2023-02-26 02:43:52 +08:00
LICENSE Create LICENSE 2022-03-02 00:51:13 +00:00
README.md chang to md 2023-02-26 02:43:52 +08:00
setk.run add: setk 2023-02-26 02:42:56 +08:00
setk_tnt.run add: setk 2023-02-26 02:42:56 +08:00
stats.run init 2022-03-02 00:50:25 +00:00
tnt.run add *_no.tre 2023-01-29 01:49:58 +08:00

TNT Script used by Guoyi

This scripts are followed MIT except for setk.run which belongs to Salvador Arias(Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).

tnt.run

  • file.tnt must be changed to your own file;

  • trees.tre, bt.tre are trees with taxaname;

  • trees_no.tre, bt_no.tre are trees without taxaname which can be put into Winclada with the file.tnt;

  • majority can be replaced by nelsen;

  • boot can be replaced by jack;

setk_tnt.run

  • file.tnt must be changed to your own file;

  • You can find the recommended k from setk.log and then change in piwe= tnt.run;