guoyi.run | ||
LICENSE | ||
README.md |
TNT Script used by Guoyi
This script follows MIT and part of script is from setk.run belonging to Salvador Arias (Instituto Miguel Lillo, San Miguel de Tucumán, Argentina).
Usage
-
Place this script and your matrix tnt file
filename
under the folder that you calltnt
orexe
file is placed -
Enter
tnt
-
Enter command
guoyi filename;
Functions
-
Estimate implied weighting K value.
-
Search trees via TBR Mult and Xmult.
-
Perform Strict consensus.
-
Calculate Relative Bremer support, jackknifing, and bootstrap.
-
Calculate TL, CI, and RI.
Options
-
Results instructions are at the end of
tnt.log
. -
trees.tre
,con.tre
are trees with taxaname. -
trees_no.tre
,con_no.tre
are trees without taxaname. -
con_no.tre
can be put into Winclada with your tnt matrix filefilename
. -
nelsen
can be replaced bymajority
. -
xmult
andmult
replications and hold trees number can be adjusted.