fix: select latest tree via tchoose/
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62937d5d65
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1 changed files with 31 additions and 3 deletions
34
guoyi.run
34
guoyi.run
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@ -97,9 +97,9 @@ hold 10000;
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/*Search trees*/
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xpiwe(*;
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mult=replic 1000 tbr hold 100;
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mult=replic 1000 tbr hold 1000;
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sect: slack 1000;
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xmult=hit 1000 noupdate replic 10 drift 10 ratchet 10 fuse 10 hold 1 keepall;
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xmult=hit 1000 noupdate replications 20 drift 10 ratchet 10 fuse 10 hold 1 keepall;
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piwe&;
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/*Export trees*/
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@ -107,12 +107,24 @@ export= trees.tre;
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taxname-;
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export= trees_no.tre;
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taxname=;
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tsave = trees.ctf;
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tsave *= trees.tnt.tre;
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/*Consensus tree*/
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bbreak=tbr;
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nelsen *;
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tchoose/;
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/*Export consensus tree*/
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export - original.tre;
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taxname-;
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export - original_no.tre;
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taxname=;
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tsave = original.ctf;
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tsave *= original.tnt.tre;
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/*Get Bremer/jak/boot support*/
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tchoose/;
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ttags=;
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sub 1; hold +1000; bbreak=fill;
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sub 2; hold +2000; bbreak=fill;
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@ -128,6 +140,11 @@ resample boot replications 1000;
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/*Export consensus tree with supports*/
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ttags & resample.svg thickness 7 italics fontsize 15;
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quote - /----------------------------------------------\;
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quote - resample tags start ;
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ttags/;
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quote - resample tags stop ;
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quote - \----------------------------------------------/;
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export < resample.tre;
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taxname-;
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export - resample_no.tre;
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@ -138,6 +155,11 @@ taxname =;
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ttags-;
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ttags=;
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apo >0;
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quote - /----------------------------------------------\;
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quote - apomorphy tags start ;
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ttags/;
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quote - apomorphy tags stop ;
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quote - \----------------------------------------------/;
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ttags & apo.svg thickness 7 italics fontsize 15;
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export < apo.tre;
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taxname-;
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@ -176,12 +198,18 @@ quote - | The file `tnt.log` contains |;
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quote - | K, TL, CI and RI |;
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quote - | The file `trees*.tre` contain |;
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quote - | trees found by mult and xmult |;
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quote - | The file `original*.tre` contain |;
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quote - | strict consensus tree without label |;
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quote - | The file `resample*.tre` contain |;
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quote - | strict consensus tree |;
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quote - | consensus tree with support |;
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quote - | The file `apo*.tre` contain |;
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quote - | tree with apomorphic character |;
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quote - | The file `*_no.tre` contain |;
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quote - | tree with `taxaname-` |;
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quote - | The file `*.ctf` tree file is |;
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quote - | only readable for TNT |;
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quote - | The file `*.tnt.tre` contain |;
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quote - | is the ctf file with taxname |;
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quote - | The file `resample.svg` contain |;
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quote - | strict consensus tree with |;
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quote - | relative bremer, jak and boot |;
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