malacology/TNT_Script
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fix: wc related; polish: var string

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kuoi 2023-10-10 14:41:21 +08:00
parent b763809491
commit 76c422d958
1 changed files with 25 additions and 23 deletions
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48
guoyi.run
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@ -41,8 +41,8 @@ end
/*Var for handling args*/
var:
dojak doboot dosym dobrs dorbrs rsmp dobremer
dostr domjr dohlf
doew doiw doeiw dowt wttype
dostr domjr dohlf contype
doew doiw doeiw dowt wtstring wttype
kvalue
search;
@ -54,15 +54,16 @@ set search 0;
/*handle weighting type*/
if (argnumber>=3)
if (eqstring [ %3 ew ])
set wtstring $%3;
if (eqstring [ $wtstring ew ])
set doew 1;
set wttype 1;
else
if (eqstring [ %3 iw ])
if (eqstring [ $wtstring iw ])
set doiw 1;
set wttype 2;
else
if (eqstring [ %3 eiw ])
if (eqstring [ $wtstring eiw ])
set doeiw 1;
set wttype 3;
else
@ -124,26 +125,27 @@ end
/*handle consensus type*/
if (argnumber>=6)
set contype $%5;
if ('dobremer')
set dostr 1;
if (eqstring [ %5 str ])
if (eqstring [ $contype str ])
else
if (eqstring [ %5 mjr ])
if (eqstring [ $contype mjr ])
errmsg Bremer support or any bremer support variations must use strict consensus;
else
if (eqstring [ %5 hlf ])
if (eqstring [ $contype hlf ])
errmsg Bremer support or any bremer support variations must use strict consensus;
else
errmsg Consensus type must be str mjr or hlf;
end end end
else
if (eqstring [ %5 str ])
if (eqstring [ $contype str ])
set dostr 1;
else
if (eqstring [ %5 mjr ])
if (eqstring [ $contype mjr ])
set domjr 1;
else
if (eqstring [ %5 hlf ])
if (eqstring [ $contype hlf ])
set dohlf 1;
else
errmsg Consensus type must be str mjr or hlf;
@ -151,10 +153,11 @@ if (argnumber>=6)
end
else
if (argnumber==5)
if ((eqstring [ %5 mjr ]) || (eqstring [ %5 hlf ]))
set contype $%5;
if ((eqstring [ $contype mjr ]) || (eqstring [ $contype hlf ]))
errmsg Bremer support or any bremer support variations must use strict consensus;
else
if (eqstring [ %5 str ])
if (eqstring [ $contype str ])
set dostr 1;
else
errmsg Consensus type must be str mjr or hlf;
@ -432,8 +435,16 @@ set themax maxsteps;
set TL length[0];
set CI 'themin'/'TL'; /*CI=1 means no homoplasy*/
set RI ('themax'-'TL')/('themax'-'themin'); /*RI=1 character fits perfetcly*/
report=;
/*Report CI/RI/TL */
log %7.report.log;
macfloat 3;
quote Consistency Index (CI) is 'CI';
quote Retention Index (RI) is 'RI';
quote Tree Length (TL) is 'TL';
log/;
watch-;
/*Generate ss file for winclada*/
log %7.winclada.ss;
/*get basic info*/
@ -461,15 +472,6 @@ runc!
tntprintf("proc/;\n");
!
log/;
/*Report CI/RI/TL */
log %7.report.log;
macfloat 3;
quote Consistency Index (CI) is 'CI';
quote Retention Index (RI) is 'RI';
quote Tree Length (TL) is 'TL';
log/;
log + %7.tnt.log;
/*Report*/