malacology/TNT_Script
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change con* to resample* due to win version bug

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kuoi 2023-03-02 02:48:23 +08:00
parent 06da49f7f2
commit 55f0e78d36
2 changed files with 8 additions and 8 deletions
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4
README.md
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@ -28,9 +28,9 @@ The TNT script follows MIT and part of script is from setk.run belonging to Salv
- Results instructions are at the end of `tnt.log`. - Results instructions are at the end of `tnt.log`.
- `trees.tre`, `con.tre` are trees with taxname. - `trees.tre`, `resample.tre` are trees with taxname.
- `trees_no.tre`, `con_no.tre` are trees without taxname. - `trees_no.tre`, `resample_no.tre` are trees without taxname.
- `nelsen` can be replaced by `majority`. - `nelsen` can be replaced by `majority`.

12
guoyi.run
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@ -23,7 +23,7 @@ quote - | Implied weighting will be estimated. |;
quote - | TBR Mult and Xmult will be performed. |; quote - | TBR Mult and Xmult will be performed. |;
quote - | Strict consensus will be used. |; quote - | Strict consensus will be used. |;
quote - | Relative bremer support, jackknifing and |; quote - | Relative bremer support, jackknifing and |;
quote - | bootstrap will be shown on the con.svg. |; quote - | boot will be shown on the resample.svg. |;
quote - | Apomorphic characters mapping will be shown |; quote - | Apomorphic characters mapping will be shown |;
quote - | on the apo.svg and saved to apo*.tre. |; quote - | on the apo.svg and saved to apo*.tre. |;
quote - | TL, CI and RI will be calculated finally. |; quote - | TL, CI and RI will be calculated finally. |;
@ -127,10 +127,10 @@ resample jak replications 1000;
resample boot replications 1000; resample boot replications 1000;
/*Export consensus tree with supports*/ /*Export consensus tree with supports*/
ttags & con.svg thickness 7 italics fontsize 15; ttags & resample.svg thickness 7 italics fontsize 15;
export < con.tre; export < resample.tre;
taxname-; taxname-;
export - con_no.tre; export - resample_no.tre;
/*Apomorphic characters*/ /*Apomorphic characters*/
export = winclada.tre; export = winclada.tre;
@ -176,13 +176,13 @@ quote - | The file `tnt.log` contains |;
quote - | K, TL, CI and RI |; quote - | K, TL, CI and RI |;
quote - | The file `trees*.tre` contain |; quote - | The file `trees*.tre` contain |;
quote - | trees found by mult and xmult |; quote - | trees found by mult and xmult |;
quote - | The file `con*.tre` contain |; quote - | The file `resample*.tre` contain |;
quote - | strict consensus tree |; quote - | strict consensus tree |;
quote - | The file `apo*.tre` contain |; quote - | The file `apo*.tre` contain |;
quote - | tree with apomorphic character |; quote - | tree with apomorphic character |;
quote - | The file `*_no.tre` contain |; quote - | The file `*_no.tre` contain |;
quote - | tree with `taxaname-` |; quote - | tree with `taxaname-` |;
quote - | The file `con.svg` contain |; quote - | The file `resample.svg` contain |;
quote - | strict consensus tree with |; quote - | strict consensus tree with |;
quote - | relative bremer, jak and boot |; quote - | relative bremer, jak and boot |;
quote - | support on the tree |; quote - | support on the tree |;