TNT_Script/src_tnt2figtree/README.md

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2024-01-14 22:30:04 +08:00
# TNT2FigTree
```
~|~|\ |~|~~)|~o(~|~|~._ _ _
| | \| | /_|~| _| | | }_}_
MIT, Guoyi Zhang, 2024
```
## Function
Convert TNT output tree file with resample tags, e.g. `resample.tre` produced by TNT script `guoyi.run`, to complete nexus format tree.
## Compile
### Linux & Unix
```
mkdir -p build && cd build
cmake ..
make && make install
```
### Windows
```
cl /EHsc tnt2figtree.cpp
```
## Usage
```
tnt2figtree ${input_file} ${output_file}
```
Interactive commands are also available.
```
tnt2figtree
~|~|\ |~|~~)|~o(~|~|~._ _ _
| | \| | /_|~| _| | | }_}_
TNT2FigTree
MIT, Guoyi Zhang, 2024
please type help to see more commands
tnt2figtree> help
help show interactive commands help
import <filename> import a TNT output nexus format tree by TNT export command
export <filename> export a nexus format tree file
quit quit the program
exit exit the program
tnt2figree>
```