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1c73eb1479
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polish: adjust some parameters
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2025-02-14 14:08:21 +11:00 |
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a09fd55086
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polish: change / to buildPath for RGBEPP_refmix
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2025-02-09 18:11:05 +11:00 |
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5137357012
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polish: avoid reference mismatch
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2025-01-12 01:07:16 +11:00 |
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b62f6c7766
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add: refmix version as compar
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2025-01-08 11:52:53 +11:00 |
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0d8ca08d9e
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fix: skip the missing gene
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2024-12-12 10:37:49 +11:00 |
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5a504bcdfd
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fix: -m missing
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2024-12-10 19:11:18 +11:00 |
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9b828f5542
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fix: make all as default function
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2024-12-10 15:39:56 +11:00 |
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85ee70b7e2
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fix: correct the prepare list
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2024-12-10 14:48:51 +11:00 |
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570e42be0d
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fix: duplication of intro
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2024-12-09 17:55:23 +11:00 |
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7479fe44fd
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polish: the begin tab
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2024-12-09 17:45:12 +11:00 |
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b3429e9d74
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add: readme for delstop
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2024-12-09 17:37:16 +11:00 |
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fb8ceb6cbf
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fix: rm something meaningless
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2024-12-09 17:25:21 +11:00 |
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811a1a6c0e
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polish: update README and part arguments
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2024-12-09 17:24:08 +11:00 |
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bbc3d7fe82
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polish: make the Directory can also be changed
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2024-12-09 16:51:23 +11:00 |
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c91b0f8fb2
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polish: clean unused path
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2024-12-09 16:24:56 +11:00 |
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51630f7006
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fix: ref and gen conflict & " issue & splitfasta path
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2024-12-09 16:22:03 +11:00 |
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caf80feabf
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polish: make codon module
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2024-12-09 15:34:33 +11:00 |
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4d3b5c2001
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polish: use buildPath instead of /; add: codon only
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2024-12-09 15:23:55 +11:00 |
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78d7aad869
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add: splitfasta d version
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2024-12-09 12:09:48 +11:00 |
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5cef63d839
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polish: add some para check
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2024-12-08 18:08:00 +11:00 |
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1da143bdbc
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polish: correct the config
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2024-12-08 17:18:57 +11:00 |
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e89a83a542
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polish: get diamond and sortdiamond done
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2024-12-08 17:15:43 +11:00 |
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50f99a9575
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update: fix the first two steps
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2024-10-23 18:26:22 +11:00 |
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1227280755
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fix: skip genes
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2024-09-19 13:48:13 +10:00 |
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56c0293057
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polish: rm useless func
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2024-09-18 17:09:00 +10:00 |
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9b18eb1777
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add: dub.sdl multiple configuration
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2024-09-18 17:06:34 +10:00 |
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d64365d842
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polish: splitfasta
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2024-09-18 17:02:39 +10:00 |
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45bcd7f3a1
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add: count fasta taxa from one folder
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2024-09-15 16:12:47 +10:00 |
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b63668504d
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fix: use method3 to polish consen
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2024-09-15 13:48:19 +10:00 |
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1697e38b97
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fix: some error and typo
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2024-09-14 16:51:22 +10:00 |
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c5928b62f0
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add: de novo map
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2024-09-14 15:50:09 +10:00 |
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516ce17d13
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try: replace the varcall process
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2024-09-13 15:35:35 +10:00 |
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54bf6d9c72
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try: replace the varcall process
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2024-09-13 15:34:33 +10:00 |
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7729c2e6ff
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polish: convert fasta
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2024-09-12 15:07:23 +10:00 |
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2968698cda
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add: command check and the config example file
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2024-09-11 12:13:14 +10:00 |
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967960f5bc
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polish: parallel delstop and trimal
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2024-09-11 11:41:09 +10:00 |
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79fa1fac74
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fix: some words
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2024-09-10 18:43:18 +10:00 |
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31296d3cc9
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polish: varcall with parallel
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2024-09-10 18:09:11 +10:00 |
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28ef396afd
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polish: trimming methods
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2024-09-10 15:09:05 +10:00 |
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1752e785b4
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add: trimming
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2024-09-10 02:37:06 +10:00 |
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f220da124e
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fix: delstop arg check
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2024-09-10 02:25:16 +10:00 |
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bc4526da33
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polish: use D instead cpp version
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2024-09-10 02:02:03 +10:00 |
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130640eade
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add: C++ software to delete the stop codon
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2024-09-09 16:17:15 +10:00 |
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7641fd7ed3
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add: spades de novo
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2024-09-09 12:25:32 +10:00 |
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51db2c767f
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add: more path args
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2024-09-09 11:45:55 +10:00 |
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391dc5c17d
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polish: add get path from config file
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2024-09-09 11:33:50 +10:00 |
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9ae0c38656
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add: align with parallel
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2024-09-09 03:19:42 +10:00 |
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c423431a65
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add: get arg_g
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2024-09-09 02:04:36 +10:00 |
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7dcef7bba1
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add: consensu and split and convert fasta
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2024-09-09 01:17:57 +10:00 |
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765294f017
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polish: give a D version
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2024-09-08 04:48:54 +10:00 |
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