Commit graph

82 commits

Author SHA1 Message Date
1c73eb1479 polish: adjust some parameters 2025-02-14 14:08:21 +11:00
a09fd55086 polish: change / to buildPath for RGBEPP_refmix 2025-02-09 18:11:05 +11:00
5137357012 polish: avoid reference mismatch 2025-01-12 01:07:16 +11:00
b62f6c7766 add: refmix version as compar 2025-01-08 11:52:53 +11:00
0d8ca08d9e fix: skip the missing gene 2024-12-12 10:37:49 +11:00
5a504bcdfd fix: -m missing 2024-12-10 19:11:18 +11:00
9b828f5542 fix: make all as default function 2024-12-10 15:39:56 +11:00
85ee70b7e2 fix: correct the prepare list 2024-12-10 14:48:51 +11:00
570e42be0d fix: duplication of intro 2024-12-09 17:55:23 +11:00
7479fe44fd polish: the begin tab 2024-12-09 17:45:12 +11:00
b3429e9d74 add: readme for delstop 2024-12-09 17:37:16 +11:00
fb8ceb6cbf fix: rm something meaningless 2024-12-09 17:25:21 +11:00
811a1a6c0e polish: update README and part arguments 2024-12-09 17:24:08 +11:00
bbc3d7fe82 polish: make the Directory can also be changed 2024-12-09 16:51:23 +11:00
c91b0f8fb2 polish: clean unused path 2024-12-09 16:24:56 +11:00
51630f7006 fix: ref and gen conflict & " issue & splitfasta path 2024-12-09 16:22:03 +11:00
caf80feabf polish: make codon module 2024-12-09 15:34:33 +11:00
4d3b5c2001 polish: use buildPath instead of /; add: codon only 2024-12-09 15:23:55 +11:00
78d7aad869 add: splitfasta d version 2024-12-09 12:09:48 +11:00
5cef63d839 polish: add some para check 2024-12-08 18:08:00 +11:00
1da143bdbc polish: correct the config 2024-12-08 17:18:57 +11:00
e89a83a542 polish: get diamond and sortdiamond done 2024-12-08 17:15:43 +11:00
50f99a9575 update: fix the first two steps 2024-10-23 18:26:22 +11:00
1227280755 fix: skip genes 2024-09-19 13:48:13 +10:00
56c0293057 polish: rm useless func 2024-09-18 17:09:00 +10:00
9b18eb1777 add: dub.sdl multiple configuration 2024-09-18 17:06:34 +10:00
d64365d842 polish: splitfasta 2024-09-18 17:02:39 +10:00
45bcd7f3a1 add: count fasta taxa from one folder 2024-09-15 16:12:47 +10:00
b63668504d fix: use method3 to polish consen 2024-09-15 13:48:19 +10:00
1697e38b97 fix: some error and typo 2024-09-14 16:51:22 +10:00
c5928b62f0 add: de novo map 2024-09-14 15:50:09 +10:00
516ce17d13 try: replace the varcall process 2024-09-13 15:35:35 +10:00
54bf6d9c72 try: replace the varcall process 2024-09-13 15:34:33 +10:00
7729c2e6ff polish: convert fasta 2024-09-12 15:07:23 +10:00
2968698cda add: command check and the config example file 2024-09-11 12:13:14 +10:00
967960f5bc polish: parallel delstop and trimal 2024-09-11 11:41:09 +10:00
79fa1fac74 fix: some words 2024-09-10 18:43:18 +10:00
31296d3cc9 polish: varcall with parallel 2024-09-10 18:09:11 +10:00
28ef396afd polish: trimming methods 2024-09-10 15:09:05 +10:00
1752e785b4 add: trimming 2024-09-10 02:37:06 +10:00
f220da124e fix: delstop arg check 2024-09-10 02:25:16 +10:00
bc4526da33 polish: use D instead cpp version 2024-09-10 02:02:03 +10:00
130640eade add: C++ software to delete the stop codon 2024-09-09 16:17:15 +10:00
7641fd7ed3 add: spades de novo 2024-09-09 12:25:32 +10:00
51db2c767f add: more path args 2024-09-09 11:45:55 +10:00
391dc5c17d polish: add get path from config file 2024-09-09 11:33:50 +10:00
9ae0c38656 add: align with parallel 2024-09-09 03:19:42 +10:00
c423431a65 add: get arg_g 2024-09-09 02:04:36 +10:00
7dcef7bba1 add: consensu and split and convert fasta 2024-09-09 01:17:57 +10:00
765294f017 polish: give a D version 2024-09-08 04:48:54 +10:00