malacology/RGBEPP
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

polish: parallel delstop and trimal

Browse source
This commit is contained in:
kuoi 2024-09-11 11:41:09 +10:00
parent 79fa1fac74
commit 967960f5bc
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
RGBEPP.d
View file

@ -347,7 +347,7 @@ void processTrimming(string[] ARG_G, string DirAlign, string DirTrim, string Pat
createDir(DirNT_out); createDir(DirNT_out);
// copy file firstly // copy file firstly
foreach (gene; ARG_G){ foreach (gene; parallel(ARG_G,1)){
string inputFastaAA = DirAA ~ "/" ~ gene ~ ".fasta"; string inputFastaAA = DirAA ~ "/" ~ gene ~ ".fasta";
string outputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta"; string outputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta";
string inputFastaNT = DirNT ~ "/" ~ gene ~ ".fasta"; string inputFastaNT = DirNT ~ "/" ~ gene ~ ".fasta";
@ -363,7 +363,7 @@ void processTrimming(string[] ARG_G, string DirAlign, string DirTrim, string Pat
string DirTrimNT = DirTrim ~ "/" ~ "NT"; string DirTrimNT = DirTrim ~ "/" ~ "NT";
createDir(DirTrim); createDir(DirTrim);
createDir(DirTrimNT); createDir(DirTrimNT);
foreach (gene; ARG_G){ foreach (gene; parallel(ARG_G,1)){
string inputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta"; string inputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta";
string inputBackTransNT = DirNT_out ~ "/" ~ gene ~ ".fasta"; string inputBackTransNT = DirNT_out ~ "/" ~ gene ~ ".fasta";
string outputFastaNT = DirTrimNT ~ "/" ~ gene ~ ".fasta"; string outputFastaNT = DirTrimNT ~ "/" ~ gene ~ ".fasta";