From 967960f5bcdd512ce36e58e77cbc7f7c2b01a584 Mon Sep 17 00:00:00 2001 From: Guoyi Zhang Date: Wed, 11 Sep 2024 11:41:09 +1000 Subject: [PATCH] polish: parallel delstop and trimal --- RGBEPP.d | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/RGBEPP.d b/RGBEPP.d index 643b991..7d4c151 100644 --- a/RGBEPP.d +++ b/RGBEPP.d @@ -347,7 +347,7 @@ void processTrimming(string[] ARG_G, string DirAlign, string DirTrim, string Pat createDir(DirNT_out); // copy file firstly - foreach (gene; ARG_G){ + foreach (gene; parallel(ARG_G,1)){ string inputFastaAA = DirAA ~ "/" ~ gene ~ ".fasta"; string outputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta"; string inputFastaNT = DirNT ~ "/" ~ gene ~ ".fasta"; @@ -363,7 +363,7 @@ void processTrimming(string[] ARG_G, string DirAlign, string DirTrim, string Pat string DirTrimNT = DirTrim ~ "/" ~ "NT"; createDir(DirTrim); createDir(DirTrimNT); - foreach (gene; ARG_G){ + foreach (gene; parallel(ARG_G,1)){ string inputFastaAA = DirAA_out ~ "/" ~ gene ~ ".fasta"; string inputBackTransNT = DirNT_out ~ "/" ~ gene ~ ".fasta"; string outputFastaNT = DirTrimNT ~ "/" ~ gene ~ ".fasta";