malacology/RGBEPP
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polish: try to make current masce multiple threads

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kuoi 2024-07-03 13:36:38 +10:00
parent d06242d91f
commit 6d3dde8c11
1 changed files with 7 additions and 1 deletions
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8
RGBEPP.sh
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@ -250,12 +250,18 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "align" ]; then
exit 1
fi
current_thread=0
mkdir -p $DirAlign
mkdir -p $DirAlign/AA && mkdir -p $DirAlign/NT
cd $DirMerge
for (( i=0; i<$length_gn; i++ ))
do
java -jar $PathMacse -prog alignSequences -seq ${genes[$i]}.fasta -out_AA ../$DirAlign/AA/${genes[$i]}.fasta -out_NT ../$DirAlign/NT/${genes[$i]}.fasta
java -jar $PathMacse -prog alignSequences -seq ${genes[$i]}.fasta -out_AA ../$DirAlign/AA/${genes[$i]}.fasta -out_NT ../$DirAlign/NT/${genes[$i]}.fasta &
((current_thread++))
if [ $current_thread -eq $ARG_T ]; then
wait
current_thread=0
fi
done
cd -