malacology/RGBEPP
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

change: GPL-2.0-only

Browse source
This commit is contained in:
kuoi 2024-07-05 11:34:56 +10:00
parent 698ab4a2cd
commit 4c0b989047
1 changed files with 4 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
RGBEPP.sh
View file

@ -6,12 +6,12 @@ pkgver=0.0.1
DirRaw=00_raw
DirQcTrim=01_fastp
DirAssembly=02_spades
DirFasta=03_contig
DirMap=04_map
DirFasta=03_assemblied
DirMap=04_diamond
DirPre=05_pre
DirSplit=06_split
DirMerge=07_merge
DirAlign=08_align
DirAlign=08_macse
PathSplitfsata=~/Downloads/PhD/wes/splitfasta-cpp
PathMacse=/usr/share/java/macse.jar
@ -30,7 +30,7 @@ show_help(){
# echo -e "\t\t\t\t\t\t\t\033[0;31mR\033[0m\033[0;92mG\033[0m\033[0;94mB\033[0m \033[0;33mE\033[0m\033[0;94mP\033[0m\033[0;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \
echo -e "\t\t\t\t\t\t\t\033[0;47;31mR\033[0m\033[0;47;92mG\033[0m\033[0;47;94mB\033[0m\033[0;47m \033[0m\033[0;47;33mE\033[0m\033[0;47;94mP\033[0m\033[0;47;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \
Version: $pkgver\n \
License: GPL-3.0-only\n \
License: GPL-2.0-only\n \
Author: Guoyi Zhang\n \
-c\t--contigs\tcontings type: scaffolds or contigs\n \
-g\t--genes\t\tgene file path\n \