From 4c0b9890478ccf03b7799526a154eb976885e5b0 Mon Sep 17 00:00:00 2001 From: Guoyi Zhang Date: Fri, 5 Jul 2024 11:34:56 +1000 Subject: [PATCH] change: GPL-2.0-only --- RGBEPP.sh | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/RGBEPP.sh b/RGBEPP.sh index 365be73..4b2f408 100644 --- a/RGBEPP.sh +++ b/RGBEPP.sh @@ -6,12 +6,12 @@ pkgver=0.0.1 DirRaw=00_raw DirQcTrim=01_fastp DirAssembly=02_spades -DirFasta=03_contig -DirMap=04_map +DirFasta=03_assemblied +DirMap=04_diamond DirPre=05_pre DirSplit=06_split DirMerge=07_merge -DirAlign=08_align +DirAlign=08_macse PathSplitfsata=~/Downloads/PhD/wes/splitfasta-cpp PathMacse=/usr/share/java/macse.jar @@ -30,7 +30,7 @@ show_help(){ # echo -e "\t\t\t\t\t\t\t\033[0;31mR\033[0m\033[0;92mG\033[0m\033[0;94mB\033[0m \033[0;33mE\033[0m\033[0;94mP\033[0m\033[0;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \ echo -e "\t\t\t\t\t\t\t\033[0;47;31mR\033[0m\033[0;47;92mG\033[0m\033[0;47;94mB\033[0m\033[0;47m \033[0m\033[0;47;33mE\033[0m\033[0;47;94mP\033[0m\033[0;47;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \ Version: $pkgver\n \ - License: GPL-3.0-only\n \ + License: GPL-2.0-only\n \ Author: Guoyi Zhang\n \ -c\t--contigs\tcontings type: scaffolds or contigs\n \ -g\t--genes\t\tgene file path\n \