malacology/RGBEPP
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change: GPL-2.0-only

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kuoi 2024-07-05 11:34:56 +10:00
parent 698ab4a2cd
commit 4c0b989047
1 changed files with 4 additions and 4 deletions
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RGBEPP.sh
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@ -6,12 +6,12 @@ pkgver=0.0.1
DirRaw=00_raw DirRaw=00_raw
DirQcTrim=01_fastp DirQcTrim=01_fastp
DirAssembly=02_spades DirAssembly=02_spades
DirFasta=03_contig DirFasta=03_assemblied
DirMap=04_map DirMap=04_diamond
DirPre=05_pre DirPre=05_pre
DirSplit=06_split DirSplit=06_split
DirMerge=07_merge DirMerge=07_merge
DirAlign=08_align DirAlign=08_macse
PathSplitfsata=~/Downloads/PhD/wes/splitfasta-cpp PathSplitfsata=~/Downloads/PhD/wes/splitfasta-cpp
PathMacse=/usr/share/java/macse.jar PathMacse=/usr/share/java/macse.jar
@ -30,7 +30,7 @@ show_help(){
# echo -e "\t\t\t\t\t\t\t\033[0;31mR\033[0m\033[0;92mG\033[0m\033[0;94mB\033[0m \033[0;33mE\033[0m\033[0;94mP\033[0m\033[0;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \ # echo -e "\t\t\t\t\t\t\t\033[0;31mR\033[0m\033[0;92mG\033[0m\033[0;94mB\033[0m \033[0;33mE\033[0m\033[0;94mP\033[0m\033[0;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \
echo -e "\t\t\t\t\t\t\t\033[0;47;31mR\033[0m\033[0;47;92mG\033[0m\033[0;47;94mB\033[0m\033[0;47m \033[0m\033[0;47;33mE\033[0m\033[0;47;94mP\033[0m\033[0;47;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \ echo -e "\t\t\t\t\t\t\t\033[0;47;31mR\033[0m\033[0;47;92mG\033[0m\033[0;47;94mB\033[0m\033[0;47m \033[0m\033[0;47;33mE\033[0m\033[0;47;94mP\033[0m\033[0;47;33mP\033[0m\n\t\t\t\t\tReference Genome based Exon Phylogeny Pipeline\n \
Version: $pkgver\n \ Version: $pkgver\n \
License: GPL-3.0-only\n \ License: GPL-2.0-only\n \
Author: Guoyi Zhang\n \ Author: Guoyi Zhang\n \
-c\t--contigs\tcontings type: scaffolds or contigs\n \ -c\t--contigs\tcontings type: scaffolds or contigs\n \
-g\t--genes\t\tgene file path\n \ -g\t--genes\t\tgene file path\n \