malacology/RGBEPP
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fix: function name typo

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This commit is contained in:
kuoi 2024-07-03 17:38:07 +10:00
parent c0ea2c4318
commit 0256f518c5
1 changed files with 3 additions and 3 deletions
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6
RGBEPP.sh
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@ -301,7 +301,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "pre" ]; then
mkdir -p $DirPre mkdir -p $DirPre
check_var "ARG_L" check_var "ARG_L"
checkPath "PathSortdiamond" check_path "PathSortdiamond"
for (( i=0; i<$length_fn; i++ )); do for (( i=0; i<$length_fn; i++ )); do
$PathSortdiamond $DirMap/${full_names[$i]}.m8 $DirPre/${full_names[$i]}.fasta $PathSortdiamond $DirMap/${full_names[$i]}.m8 $DirPre/${full_names[$i]}.fasta
@ -314,7 +314,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "split" ]; then
cd $DirPre cd $DirPre
check_var "ARG_L" check_var "ARG_L"
checkPath "PathSplitfasta" check_path "PathSplitfasta"
for (( i=0; i<$length_fn; i++ )); do for (( i=0; i<$length_fn; i++ )); do
$PathSplitfsata ${full_names[$i]}.fasta $PathSplitfsata ${full_names[$i]}.fasta
@ -347,7 +347,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "align" ]; then
check_var "ARG_G" check_var "ARG_G"
check_command "java" check_command "java"
check_command "parallel" check_command "parallel"
checkPath "PathMacse" check_path "PathMacse"
# current_thread=0 # current_thread=0
mkdir -p $DirAlign mkdir -p $DirAlign