diff --git a/RGBEPP.sh b/RGBEPP.sh index 41d84ee..365be73 100644 --- a/RGBEPP.sh +++ b/RGBEPP.sh @@ -301,7 +301,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "pre" ]; then mkdir -p $DirPre check_var "ARG_L" - checkPath "PathSortdiamond" + check_path "PathSortdiamond" for (( i=0; i<$length_fn; i++ )); do $PathSortdiamond $DirMap/${full_names[$i]}.m8 $DirPre/${full_names[$i]}.fasta @@ -314,7 +314,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "split" ]; then cd $DirPre check_var "ARG_L" - checkPath "PathSplitfasta" + check_path "PathSplitfasta" for (( i=0; i<$length_fn; i++ )); do $PathSplitfsata ${full_names[$i]}.fasta @@ -347,7 +347,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "align" ]; then check_var "ARG_G" check_command "java" check_command "parallel" - checkPath "PathMacse" + check_path "PathMacse" # current_thread=0 mkdir -p $DirAlign