49 lines
1.6 KiB
Text
49 lines
1.6 KiB
Text
#NEXUS
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Begin trees; [Treefile saved Sun Jun 19 13:25:16 2011]
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[!
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>Data file = /Users/james/Lab/Dave Fitzpatrick/NewMito/tiger_unix_1.02/sample_data/primate.tiger
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>Heuristic search settings:
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> Optimality criterion = parsimony
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> Character-status summary:
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> Of 898 total characters:
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> All characters are of type 'unord'
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> All characters have equal weight
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> 377 characters are constant
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> 154 variable characters are parsimony-uninformative
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> Number of parsimony-informative characters = 367
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> Gaps are treated as "missing"
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> Starting tree(s) obtained via stepwise addition
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> Addition sequence: simple (reference taxon = Lemur catta)
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> Number of trees held at each step during stepwise addition = 1
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> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
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> Steepest descent option not in effect
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> Initial 'MaxTrees' setting = 100
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> Branches collapsed (creating polytomies) if maximum branch length is zero
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> 'MulTrees' option in effect
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> Topological constraints not enforced
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> Trees are unrooted
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>
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>Heuristic search completed
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> Total number of rearrangements tried = 1092
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> Score of best tree(s) found = 1153
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> Number of trees retained = 2
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> Time used = <1 sec (CPU time = 0.01 sec)
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]
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Translate
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1 Lemur_catta,
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2 Homo_sapiens,
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3 Pan,
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4 Gorilla,
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5 Pongo,
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6 Hylobates,
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7 Macaca_fuscata,
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8 M._mulatta,
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9 M._fascicularis,
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10 M._sylvanus,
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11 Saimiri_sciureus,
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12 Tarsius_syrichta
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;
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tree PAUP_1 = [&U] (1,(((((((2,3),4),5),6),(((7,8),9),10)),11),12));
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tree PAUP_2 = [&U] (1,((((((2,(3,4)),5),6),(((7,8),9),10)),11),12));
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End;
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