%! for use by dvi2ps Version 2.00 % $Header: tex.ps,v 2.0 88/06/07 15:12:32 peterd Rel2 $ % a start (Ha!) at a TeX mode for PostScript. % The following defines procedures assumed and used by program "dvi2ps" % and must be downloaded or sent as a header file for all TeX jobs. % By: Neal Holtz, Carleton University, Ottawa, Canada % % % June, 1985 % Last Modified: Aug 25/85 % oystr 12-Feb-1986 % Changed @dc macro to check for a badly formed bits in character % definitions. Can get a <> bit map if a character is not actually % in the font file. This is absolutely guaranteed to drive the % printer nuts - it will appear that you can no longer define a % new font, although the built-ins will still be there. % mackay 4-Jan-1988 % Changed size of character array to reflect gf usage (256 characters) % To convert this file into a downloaded file instead of a header % file, uncomment all of the lines beginning with %-% %-%0000000 % Server loop exit password %-%serverdict begin exitserver %-% systemdict /statusdict known %-% {statusdict begin 9 0 3 setsccinteractive /waittimeout 300 def end} %-% if /TeXDict 200 dict def % define a working dictionary TeXDict begin % start using it. % units are in "dots" (300/inch) /Resolution 300 def /Inch {Resolution mul} def % converts inches to internal units /Mtrx 6 array def %%%%%%%%%%%%%%%%%%%%% Page setup (user) options %%%%%%%%%%%%%%%%%%%%%%%% % dvi2ps will output coordinates in the TeX system ([0,0] 1" down and in % from top left, with y +ive downward). The default PostScript system % is [0,0] at bottom left, y +ive up. The Many Matrix Machinations in % the following code are an attempt to reconcile that. The intent is to % specify the scaling as 1 and have only translations in the matrix to % properly position the text. Caution: the default device matrices are % *not* the same in all PostScript devices; that should not matter in most % of the code below (except for lanscape mode -- in that, rotations of % -90 degrees resulted in the the rotation matrix [ e 1 ] % [ 1 e ] % where the "e"s were almost exactly but not quite unlike zeros. /@letter { letter initmatrix 72 Resolution div dup neg scale % set scaling to 1. 310 -3005 translate % move origin to top (these are not exactly 1" Mtrx currentmatrix pop % and -10" because margins aren't set exactly right) } def % note mode is like letter, except it uses less VM /@note { note initmatrix 72 Resolution div dup neg scale % set scaling to 1. 310 -3005 translate % move origin to top Mtrx currentmatrix pop } def /@landscape { letter initmatrix 72 Resolution div dup neg scale % set scaling to 1. % -90 rotate % it would be nice to be able to do this Mtrx currentmatrix 0 0.0 put % but instead we have to do things like this because what Mtrx 1 -1.0 put % should be zero terms aren't (and text comes out wobbly) Mtrx 2 1.0 put % Fie! This likely will not work on QMS printers Mtrx 3 0.0 put % (nor on others where the device matrix is not like Mtrx setmatrix % like it is on the LaserWriter). 300 310 translate % move origin to top Mtrx currentmatrix pop } def /@legal { legal initmatrix 72 Resolution div dup neg scale % set scaling to 1. 295 -3880 translate % move origin to top Mtrx currentmatrix pop } def /@manualfeed { statusdict /manualfeed true put statusdict /manualfeedtimeout 300 put % 5 minutes } def % n @copies - set number of copies /@copies { /#copies exch def } def %%%%%%%%%%%%%%%%%%%% Procedure Defintions %%%%%%%%%%%%%%%%%%%%%%%%%% /@newfont % id @newfont - -- initialize a new font dictionary { /newname exch def pop newname 7 dict def % allocate new font dictionary newname load begin /FontType 3 def /FontMatrix [1 0 0 -1 0 0] def /FontBBox [0 0 1 1] def % mackay 4-Jan-1987 changed size of array from 128 to 256 for gf fonts /BitMaps 256 array def /BuildChar {CharBuilder} def /Encoding 256 array def 0 1 255 {Encoding exch /.undef put} for end newname newname load definefont pop } def % the following is the only character builder we need. it looks up the % char data in the BitMaps array, and paints the character if possible. % char data -- a bitmap descriptor -- is an array of length 6, of % which the various slots are: /ch-image {ch-data 0 get} def % the hex string image /ch-width {ch-data 1 get} def % the number of pixels across /ch-height {ch-data 2 get} def % the number of pixels tall /ch-xoff {ch-data 3 get} def % number of pixels below origin /ch-yoff {ch-data 4 get} def % number of pixels to left of origin /ch-tfmw {ch-data 5 get} def % spacing to next character /CharBuilder % fontdict ch Charbuilder - -- image one character { /ch-code exch def % save the char code /font-dict exch def % and the font dict. /ch-data font-dict /BitMaps get ch-code get def % get the bitmap descriptor for char ch-data null eq not { ch-tfmw 0 ch-xoff neg ch-yoff neg ch-width ch-xoff sub ch-height ch-yoff sub setcachedevice ch-width ch-height true [1 0 0 1 ch-xoff ch-yoff] {ch-image} imagemask } if } def /@sf % fontdict @sf - -- make that the current font { setfont() pop } def % in the following, the font-cacheing mechanism requires that % a name unique in the particular font be generated /@dc % char-data ch @dc - -- define a new character bitmap in current font { /ch-code exch def % ++oystr 12-Feb-86++ dup 0 get length 2 lt { pop [ <00> 1 1 0 0 8.00 ] } % replace <> with null if % --oystr 12-Feb-86-- /ch-data exch def currentfont /BitMaps get ch-code ch-data put currentfont /Encoding get ch-code dup ( ) cvs cvn % generate a unique name simply from the character code put } def /@bop0 % n @bop0 - -- begin the char def section of a new page { } def /@bop1 % n @bop1 - -- begin a brand new page { pop erasepage initgraphics Mtrx setmatrix /SaveImage save def() pop } def %-- tjh sept. 87: if this page has a mac drawing on it, we have to %-- use showpage in the md dictionary. /@eop % - @eop - -- end a page { userdict /md known { userdict /md get type /dicttype eq { md /MacDrwgs known { md begin showpage end }{ showpage } ifelse }{ showpage } ifelse }{ showpage } ifelse SaveImage restore() pop } def /@start % - @start - -- start everything { @letter % (there is not much to do) } def /@end % - @end - -- done the whole shebang { end } def /p % x y p - -- move to position { moveto } def /r % x r - -- move right { 0 rmoveto } def /s % string s - -- show the string { show } def /c % ch c - -- show the character (code given) { c-string exch 0 exch put c-string show } def /c-string ( ) def /ru % dx dy ru - -- set a rule (rectangle) { /dy exch neg def % because dy is height up from bottom /dx exch def /x currentpoint /y exch def def % remember current point newpath x y moveto dx 0 rlineto 0 dy rlineto dx neg 0 rlineto closepath fill x y moveto } def %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% the \special command junk %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % The structure of the PostScript produced by dvi2ps for \special is: % @beginspecial % - any number of @hsize, @hoffset, @hscale, etc., commands % @setspecial % - the users file of PostScript commands % @endspecial % The @beginspecial command recognizes whether the Macintosh Laserprep % has been loaded or not, and redfines some Mac commands if so. % The @setspecial handles the users shifting, scaling, clipping commands %-- tjh sept. 87: made changes to allow postscript and macdrawing to %-- to be inserted with version 65 of the md dictionary. Many bugs %-- were fixed: %-- vo changed to vof, name conflict with md %-- vs changed to vsz, name conflict with md %-- substantially changed @setspecial and @MacSetUp %-- Also, made changes to allow users to specify offsets %-- and clip rectangles in inches. % The following are user settable options from the \special command. /@SpecialDefaults { /hs 8.5 72 mul def /vsz 11 72 mul def /ho 0 def /vof 0 def /hsc 1 def /vsc 1 def /CLIP false def } def % d @hsize - specify a horizontal clipping dimension % these 2 are executed before the MacDraw initializations /@hsize {72 mul /hs exch def /CLIP true def} def /@vsize {72 mul /vsz exch def /CLIP true def} def % d @hoffset - specify a shift for the drwgs /@hoffset {72 mul /ho exch def} def /@voffset {72 mul /vof exch def} def % s @hscale - set scale factor /@hscale {/hsc exch def} def /@vscale {/vsc exch def} def /@setclipper { hsc vsc scale CLIP { newpath 0 0 moveto hs 0 rlineto 0 vsz rlineto hs neg 0 rlineto closepath clip } if } def % this will be invoked as the result of a \special command (for the % inclusion of PostScript graphics). The basic idea is to change all % scaling and graphics back to defaults, but to shift the origin % to the current position on the page. Due to TeXnical difficulties, % we only set the y-origin. The x-origin is set at the left edge of % the page. /@beginspecial { gsave /SpecialSave save def % the following magic incantation establishes the current point as % the users origin, and reverts back to default scalings, rotations currentpoint transform initgraphics itransform translate @SpecialDefaults % setup default offsets, scales, sizes @MacSetUp % fix up Mac stuff } def %-- tjh: assume this is raw postscript, but save some state in case its not. /@setspecial { /specmtrx matrix currentmatrix def ho vof translate @setclipper } def /@endspecial { SpecialSave restore grestore } def % - @MacSetUp - turn-off/fix-up all the MacDraw stuff that might hurt us % we depend on 'psu' being the first procedure executed % by a Mac document. We redefine 'psu' to adjust page % translations, and to do all other the fixups required. % This stuff will not harm other included PS files /@MacSetUp { userdict /md known % if md is defined { userdict /md get type /dicttype eq % and if it is a dictionary { md begin % then redefine some stuff /psu % redfine psu to set origins, etc. /psu load % this procedure contains almost all the fixup code { % /letter {} def % it is bad manners to execute the real % /note {} def % versions of these (clears page image, etc.) % /legal {} def /MacDrwgs true def specmtrx setmatrix % restore pre-@setspecial state. initclip % ditto % change smalls to prevent page clearing. /smalls [ lnop lnop lnop lnop lnop lnop lnop lnop lnop ] def 0 0 0 0 ppr astore pop % prevents origin translation. % redifine cp, do the showpage later, see @eop /cp { pop pop pm restore } def % no printing of pages } concatprocs def /od % redefine od to translate and scale. % redfine load to set clipping region. /od load { ho vof translate hsc vsc scale CLIP { /nc /nc load { newpath 0 0 moveto hs 0 rlineto 0 vsz rlineto hs neg 0 rlineto closepath clip } concatprocs def } if } concatprocs def end } if } if } def % p1 p2 concatprocs p - concatenate procedures /concatprocs { /p2 exch cvlit def /p1 exch cvlit def /p p1 length p2 length add array def p 0 p1 putinterval p p1 length p2 putinterval p cvx } def end % revert to previous dictionary TeXDict begin @start %%Title: install.dvi %%Creator: dvi2ps %%EndProlog 1 @bop0 [ 300 ] /cmr17.300 @newfont cmr17.300 @sf [ 24 49 -3 0 23.499] 73 @dc [ 40 31 -2 0 36.644] 110 @dc [<80FE00C301C0CC0060F00030F00038E00018E0001CC0001CC0001C80001C80003C80003C0000F80001F8003FF003FFE00FFF C01FFF003FF0007E0000F80000F00010E00010E00010E00010E000306000303000701800F00E033001FC10> 24 31 -2 0 25.776] 115 @dc [<001F000078C000E04001E02001C02003C01003C01003C01003C01003C01003C01003C01003C01003C00003C00003C00003C0 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801C00C01E01E0FF83F8> 24 20 -1 0 23.989] 118 @dc [ 16 2 -1 -9 15.151] 45 @dc [<003FF800038000038000038000038000038000038000038000038003E3800E13801C0B80380780380380780380700380F003 80F00380F00380F00380F00380F003807003807803803803803C07801C058006198003E080> 24 29 -2 9 23.989] 113 @dc [<07FFFE00001F8000000F0000000F0000000F0000000F0000000F0000000F0000000F0000000F0000000F0000000F0000000F 0000000F0000000F0000000F0000000F0000000F0000000F0000000F0000000F0000800F0010800F0010800F0010800F0010 C00F0030400F0020400F0020600F0060780F01E07FFFFFE0> 32 31 -2 0 32.828] 84 @dc cmbx10.329 @sf [<181F80001C7FE0001EC1F8001F807C001F007C001F003E001F003E001F003F001F003F001F003F001F003F001F003F001F00 3F001F003E001F003E001F007E001F807C001FE0F8001F7FF0001F1FC0001F0000001F0000001F0000001F0000001F000000 1F0000001F0000001F0000001F0000001F000000FF000000FF000000> 32 32 -2 0 29.040] 98 @dc [ 329 ] /cmti10.329 @newfont cmti10.329 @sf [<1F000031C00060E000607000E03800E03C00E01C00E01E00E01E00E01E00700F00700F00700F00700F00380F00380F003C0E 003A0E001D0C001CF0001C00001C00000E00000E00000E00000E00000700000700000700000700003F8000078000> 24 32 -5 0 20.908] 98 @dc [<0F0700308C80705C40703C40F01C40F01C40F00E20F00E00F00E00F00E007807007807007807003807003C03801C03800E03 800707800389C000F180> 24 20 -4 0 23.232] 97 @dc [ 24 29 0 9 23.232] 112 @dc cmr10.329 @sf [ 24 31 -2 0 28.408] 76 @dc cmbx10.329 @sf [ 24 20 -2 0 21.527] 114 @dc cmr10.329 @sf [<000003E0FFFC0F100FC01E0807803E0407807E0407807C0407807C0007807C0007807C000780780007807800078078000780 70000780F0000780E0000781C00007FF80000780F0000780780007803C0007801E0007801E0007801F0007801F0007801F00 07801F0007801E0007801E0007803C00078078000F80F000FFFF8000> 32 32 -2 1 33.459] 82 @dc cmbx10.329 @sf [<01F003F807CC0F860F860F860F860F860F800F800F800F800F800F800F800F800F800F80FFFCFFFC3F800F80078003800380 0380018001800180> 16 29 -1 0 20.328] 116 @dc cmr10.329 @sf [ 32 31 -1 0 34.090] 88 @dc [<7FE7FE0700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700E00700 E00700E00700E0FFFFE00700E00700E00700E00700E00700E00700E00700E00700E00381E001C1E000E0E0003FE0> 24 32 0 0 25.252] 13 @dc 1 @bop1 cmr17.300 @sf 511 489 p (Installing) s 22 r (the) s 21 r (Staden) s 22 r 80 c -1 r (ac) s -2 r 107 c -4 r (age) s cmr12.300 @sf 810 616 p (Simon) s 17 r (Dear) s 800 718 p (21) s 16 r (Ma) s 0 r 121 c 15 r (1993) s cmbx10.432 @sf 224 911 p 49 c 69 r (In) s -1 r (tro) s 1 r (duction) s cmr10.329 @sf 224 1012 p (On) s 18 r (the) s 17 r (accompan) s 0 r (ying) s 17 r (tap) s 1 r 101 c 18 r 121 c -1 r (ou) s 17 r (will) s 18 r (\014nd) s 17 r (executables) s 18 r (for) s 17 r (one) s 18 r (of) s 18 r (SunOS) s 224 1069 p (4.x,) s 14 r (Sun) s 13 r (Solaris) s 14 r (2.x,) s 14 r (DEC) s 13 r (Ultrix,) s 14 r (DEC) s 13 r (OSF/1) s 14 r (and) s 13 r (Silicon) s 14 r (Graphics) s 13 r (SGI) s 224 1125 p (op) s 1 r (erating) s 20 r (systems.) s 33 r (Also) s 19 r (there) s 19 r (are) s 20 r (sources) s 19 r (for) s 20 r (all) s 19 r (the) s 19 r (programs) s 20 r (in) s 19 r (the) s 224 1181 p (Staden) s 15 r (pac) s 0 r 107 c -2 r (age.) s 19 r (Programs) s 15 r (in) s 15 r (the) s 15 r (pac) s 0 r 107 c -3 r (age) s 15 r (are:) s cmbx10.329 @sf 224 1275 p (mep) s 18 r (and) s 17 r (xmep) s cmr10.329 @sf 23 r (Motif) s 15 r (exploration) s 15 r (program.) s cmbx10.329 @sf 224 1369 p (nip) s 18 r (and) s 17 r (xnip) s cmr10.329 @sf 23 r (Nucleotide) s 15 r (in) s 0 r (terpretation) s 14 r (program.) s cmbx10.329 @sf 224 1463 p (nipl) s cmr10.329 @sf 23 r (Nucleotide) s 19 r (in) s 0 r (terpretation) s 19 r (program) s 19 r (\(library\).) s 34 r (Searc) s 0 r (hes) s 18 r 110 c 0 r (ucleotide) s 338 1519 p (libraries) s 15 r (for) s 15 r (patterns) s 15 r (of) s 15 r (motifs.) s cmbx10.329 @sf 224 1613 p (pip) s 18 r (and) s 17 r (xpip) s cmr10.329 @sf 23 r (Protein) s 15 r (in) s 0 r (terpretation) s 14 r (program.) s cmbx10.329 @sf 224 1707 p (pipl) s cmr10.329 @sf 23 r (Protein) s 11 r (in) s 0 r (terpretation) s 10 r (program) s 11 r (\(library\).) s 19 r (Searc) s 0 r (hes) s 10 r (protein) s 12 r (libraries) s 338 1763 p (for) s 15 r (patterns) s 15 r (of) s 15 r (motifs.) s cmbx10.329 @sf 224 1857 p (sip) s 18 r (and) s 17 r (xsip) s cmr10.329 @sf 23 r (Similarit) s -1 r 121 c 15 r (in) s -1 r 118 c -1 r (estigation) s 14 r (program.) s cmbx10.329 @sf 224 1951 p (sipl) s cmr10.329 @sf 23 r (Similarit) s 0 r 121 c 14 r (in) s 0 r 118 c -1 r (estigation) s 14 r (program) s 16 r (\(library\).) s 21 r (Compares) s 16 r 97 c 16 r (prob) s 1 r 101 c 15 r (pro-) s 338 2008 p (tein) s 15 r (or) s 15 r 110 c 0 r (ucleic) s 14 r (acid) s 15 r (sequence) s 15 r (against) s 15 r 97 c 16 r (library) s 15 r (of) s 15 r (sequences.) s cmbx10.329 @sf 224 2101 p (sap) s 18 r (and) s 17 r (xsap) s cmr10.329 @sf 23 r (The) s 15 r (original) s 15 r (sequence) s 15 r (assem) s 0 r (bly) s 14 r (program.) s cmbx10.329 @sf 224 2195 p (bap) s 18 r (and) s 17 r (xbap) s cmr10.329 @sf 23 r (Our) s 13 r (latest,) s 13 r (most) s 13 r (adv) s -1 r (anced) s 12 r (sequence) s 13 r (assem) s 0 r (bly) s 12 r (program.) s cmbx10.329 @sf 224 2289 p (dap) s 18 r (and) s 17 r (xdap) s cmr10.329 @sf 23 r (An) s 15 r (obsolete) s 15 r (assem) s 0 r (bly) s 14 r (program,) s 15 r (sup) s 1 r (erceded) s 15 r 98 c 0 r 121 c cmti10.329 @sf 14 r 98 c -1 r (ap) s cmr10.329 @sf 0 r 46 c cmbx10.329 @sf 224 2383 p (lip) s cmr10.329 @sf 23 r (Library) s 15 r (in) s 0 r (terface) s 14 r (program.) s cmbx10.329 @sf 224 2477 p (rep) s cmr10.329 @sf 23 r (Rep) s 1 r (eat) s 15 r (examination) s 15 r (program.) s cmbx10.329 @sf 224 2570 p (ted) s cmr10.329 @sf 23 r 88 c 14 r (windo) s 0 r (ws) s 14 r (utilit) s -1 r 121 c 14 r (for) s 14 r (displa) s 0 r (ying) s 13 r (and) s 15 r (editing) s 14 r (\015uorescen) s 0 r 116 c 13 r (sequencing) s 338 2627 p (mac) s 0 r (hine) s 14 r (traces.) s 925 2776 p 49 c @eop 2 @bop0 cmbx10.329 @sf [ 24 29 -4 0 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[<000400020000000C00030000000E00070000000E00070000001E00078000001F000F8000001F000F8000001F000F8000003C 801E4000003C801E4000003C801E40000078C03E20000078403C20000078403C200000F0403C100000F02078100000F02078 100001F02078080001E010F0080001E010F0080003E010F00C0003C009E0040003C009E0040003C009E00400078007C00200 078007C00200078007C002000F0007C001000F00078001000F00078003801F800FC007C0FFF07FF81FF0> 48 32 -1 1 46.716] 87 @dc cmbx10.432 @sf [<007FFFF8007FFFF8007FFFF80000FE000000FE000000FE000000FE000000FE000000FE000000FE000000FE00FFFFFFF8FFFF FFF8FFFFFFF8E0007E0070007E0038007E001C007E000E007E000E007E0007007E0003807E0001C07E0000E07E0000E07E00 00707E0000387E00001C7E00000E7E00000E7E0000077E000003FE000001FE000000FE000000FE0000007E0000003E000000 1E0000000E00> 32 39 -2 0 34.370] 52 @dc [<00001FF800000001FFFF00000007FFFFC000000FF007E000003FC000F000007F00003800007E00001C0000FE00001C0001FE 00000E0001FC00000E0003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000 070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC00000700 03FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC0000070003FC 0000070003FC0000070003FC0000070003FC0000070003FC00000700FFFFF001FFFCFFFFF001FFFCFFFFF001FFFC> 48 41 -3 0 52.883] 85 @dc [ 40 39 -2 12 38.189] 112 @dc [ 40 41 -3 0 46.989] 80 @dc [<7FFF80007FFF80007FFF800007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0 000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F00000FFFFC000 FFFFC000FFFFC00007F0000007F0000007F0000007F0000007F0000007F0000007F0000007F03E0007F07F0003F07F0003F8 7F0001F87F0000FE3E00003FFC000007F000> 32 42 -2 0 21.004] 102 @dc cmti10.329 @sf [<81F80000C6060000E80380007000C0006000E000600060006000700020003000200038002000380000003800000038000000 7800000078000001F800001FF000007FF00001FFE00001FF800003F8000003C0000003C00000038000000380010003800100 038001000180010001C0018000C003800060038000300580001C18C00007E040> 32 33 -3 1 25.555] 83 @dc cmbx10.329 @sf [ 48 31 -2 0 49.620] 77 @dc cmti10.329 @sf [<300300380070070066003803806200380380E100380380610038038071001C01C070801C01C038001C01C038001C01C03800 0E00E01C000E00E01C000E00E01C008E00E01C004700700E004700700E004780680E004740640C002630C318001C0F80F000> 40 20 -4 0 37.171] 109 @dc 3 @bop1 cmtt10.329 @sf 475 307 p (mkdir) s 24 r (/home/Staden) s cmr10.329 @sf 280 417 p (2.) s 22 r (Change) s 16 r (to) s 15 r (this) s 15 r (directory) s -3 r 46 c cmtt10.329 @sf 475 527 p (cd) s 24 r (/home/Staden) s cmr10.329 @sf 280 638 p (3.) s 22 r (Place) s 16 r (the) s 15 r (tap) s 1 r 101 c 15 r (in) s 0 r (to) s 14 r (the) s 15 r (tap) s 1 r 101 c 16 r (unit.) s 280 731 p (4.) s 22 r (Extract) s 17 r (the) s 17 r (soft) s 0 r 119 c -1 r (are) s 15 r (o\013) s 17 r (the) s 17 r (distribution) s 17 r (tap) s 1 r 101 c 17 r (\(NOTE:) s 17 r (the) s 17 r (device) s 338 787 p (name) s 15 r (ma) s 0 r 121 c 14 r 98 c 1 r 101 c 15 r (di\013eren) s 0 r 116 c 14 r (on) s 15 r 121 c 0 r (our) s 14 r (mac) s 0 r (hine\):) s cmtt10.329 @sf 475 897 p (tar) s 24 r (xvf) s 24 r (/dev/rst0) s cmr10.329 @sf 280 1007 p (5.) s 22 r 67 c 11 r (shell) s 10 r (users) s 10 r (should) s 10 r (set) s 10 r (the) s 10 r (en) s 0 r (vironmen) s -1 r 116 c 9 r 118 c -2 r (ariable) s cmbx10.329 @sf 9 r (ST) s -3 r (ADENR) s -2 r (OOT) s cmr10.329 @sf 338 1064 p (to) s 17 r 98 c 1 r 101 c 18 r (the) s 17 r (directory) s 17 r (where) s 18 r (the) s 17 r (pac) s 0 r 107 c -3 r (age) s 16 r (is) s 18 r (installed) s 17 r (and) s 17 r (source) s 17 r (the) s 338 1120 p (\014le) s cmti10.329 @sf 16 r (staden.lo) s -1 r (gin) s cmr10.329 @sf 15 r (found) s 16 r (there.) s 24 r (This) s 16 r (is) s 17 r 98 c 1 r (est) s 16 r (done) s 16 r 98 c 0 r 121 c 16 r (adding) s 16 r (lines) s 16 r (to) s 338 1177 p (their) s cmti10.329 @sf 15 r (.lo) s -1 r (gin) s cmr10.329 @sf 14 r (\014le:) s cmtt10.329 @sf 433 1287 p (setenv) s 24 r (STADENROOT) s 24 r (/home/Staden) s 433 1343 p (source) s 24 r ($STADENROOT/staden.login) s cmr10.329 @sf 338 1453 p (Users) s 14 r (of) s 14 r (the) s 13 r (Bourne) s 14 r (shell,) s 14 r (sh,) s 15 r (should) s 13 r (similarly) s 14 r (add) s 14 r (lines) s 14 r (their) s cmti10.329 @sf 14 r (.pr) s -1 r (o-) s 338 1510 p (\014le) s cmr10.329 @sf 15 r (\014le:) s cmtt10.329 @sf 433 1620 p (STADENROOT=/home/Staden) s 433 1676 p (export) s 24 r (STADENROOT) s 433 1733 p 46 c 24 r ($STADENROOT/staden.profile) s cmr10.329 @sf 338 1843 p (The) s 22 r (startup) s 22 r (routines) s 23 r (set) s 22 r (en) s 0 r (vironmen) s -1 r 116 c 21 r 118 c -2 r (ariables) s 22 r (and) s 22 r (mo) s 1 r (dify) s 23 r (the) s 338 1899 p (shell's) s 16 r (searc) s 0 r 104 c 15 r (path) s 16 r (so) s 16 r (that) s 16 r (it) s 16 r (can) s 16 r (\014nd) s 17 r (the) s 16 r (programs) s 16 r (in) s 16 r (the) s 16 r (Staden) s 338 1956 p 80 c 0 r (ac) s -2 r 107 c -2 r (age.) s 20 r (When) s 16 r (users) s 15 r (next) s 16 r (log) s 15 r (on) s 16 r (to) s 15 r (the) s 16 r (system,) s 15 r (they) s 16 r (will) s 15 r 98 c 2 r 101 c 15 r (able) s 338 2012 p (to) s 15 r (use) s 15 r (the) s 15 r (programs.) s cmbx10.432 @sf 224 2155 p 52 c 69 r (Installation) s 23 r (on) s 23 r (Unsupp) s 2 r (orted) s 23 r (Platforms) s cmr10.329 @sf 224 2256 p (Install) s 12 r (the) s 12 r (soft) s 0 r 119 c -1 r (are) s 11 r (as) s 12 r 121 c 0 r (ou) s 11 r 119 c 0 r (ould) s 11 r (for) s 12 r 97 c 12 r (supp) s 1 r (orted) s 12 r (mac) s 0 r (hine.) s 18 r 89 c -3 r (ou) s 11 r (will) s 13 r (need) s 224 2313 p (to) s 15 r (remak) s -1 r 101 c 14 r (all) s 15 r (executables.) s 20 r (The) s 14 r (script) s cmti10.329 @sf 15 r (Staden) s 3 r 14 2 ru 13 r (instal) s 3 r 108 c cmr10.329 @sf 14 r (can) s 15 r 98 c 1 r 101 c 15 r (used) s 14 r (to) s 15 r (help) s 224 2369 p (recompile) s 14 r (the) s 14 r (pac) s -1 r 107 c -2 r (age.) s 19 r 65 c 13 r (large) s 14 r 110 c 0 r (um) s -1 r 98 c 0 r (er) s 14 r (of) s 13 r (assumptions) s 14 r (ha) s 0 r 118 c -1 r 101 c 12 r 98 c 2 r (een) s 13 r (made,) s 224 2426 p (and) s 15 r 121 c 0 r (ou) s 14 r (ma) s 0 r 121 c 14 r (need) s 15 r (to) s 15 r 99 c 0 r (hange) s 14 r (the) s 15 r (mak) s 0 r (e\014les) s 14 r (to) s 15 r (suit) s 16 r 121 c -1 r (our) s 15 r (system.) s 295 2482 p (The) s 15 r (sources) s 15 r (ha) s -1 r 118 c -1 r 101 c 14 r 98 c 1 r (een) s 15 r (organised) s 15 r (in) s 0 r (to) s 14 r (sub) s 1 r (directories) s 15 r (of) s 15 r (the) s 15 r (directory) s cmbx10.329 @sf 224 2539 p (src) s cmr10.329 @sf 0 r 46 c 22 r (In) s cmbx10.329 @sf 16 r (Misc) s cmr10.329 @sf 15 r (are) s 16 r (routines) s 16 r (common) s 15 r (to) s 16 r (man) s 0 r 121 c 15 r (programs.) s 21 r (They) s 16 r (should) s 16 r 98 c 1 r 101 c 224 2595 p (made) s 19 r (\014rst.) s 31 r (In) s cmbx10.329 @sf 19 r (staden) s cmr10.329 @sf 19 r (are) s 19 r (all) s 19 r (the) s 18 r (programs) s 19 r (of) s 19 r (the) s 19 r (Staden) s 19 r (suite) s 18 r 40 c cmti10.329 @sf 0 r (mep) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 224 2652 p (nip) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 18 r (pip) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 18 r (sap) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 17 r (sip) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 18 r (dap) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 18 r (gip) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 17 r (vep) s cmr10.329 @sf 0 r 44 c cmti10.329 @sf 18 r (lip) s cmr10.329 @sf 17 r (and) s cmti10.329 @sf 17 r 114 c -1 r (ep) s cmr10.329 @sf 0 r 41 c 16 r (with) s 17 r (the) s 18 r (exception) s 17 r (of) s cmti10.329 @sf 17 r 98 c -1 r (ap) s cmr10.329 @sf 0 r 46 c 925 2776 p 51 c @eop 4 @bop0 cmbx10.329 @sf [ 24 45 -3 11 26.136] 47 @dc cmr10.329 @sf [<3F006180F0C0F060607000700070007000700070007000700070007000700070007000700070007000700070007000700070 007000F007F0007000000000000000000000000000E001F001F001F000E0> 16 40 2 9 13.889] 106 @dc cmbx10.432 @sf [<00FF800003FFF0000FFFF8001F01FE003C007F0078003F8078003F80FC001FC0FE001FC0FE001FE0FE001FE0FE001FE07C00 1FE018001FE000001FE000001FE000001FC000001FC000001F800C003F000E003E000F80FC000FFFF8000E7FC0000E000000 0E0000000E0000000E0000000E0000000E0000000FFE00000FFFC0000FFFE0000FFFF0000FFFF8000FFFFC000FFFFE000F80 3F000C000300> 32 39 -3 0 34.370] 53 @dc [<0000FFE00000000FFFFE0000003FC07F800000FF001FE00001FC0007F00003F80003F80007F00001FC000FF00001FE001FE0 0000FF001FE00000FF003FC000007F803FC000007F807FC000007FC07FC000007FC07F8000003FC0FF8000003FE0FF800000 3FE0FF8000003FE0FF8000003FE0FF8000003FE0FF8000003FE0FF8000003FE0FF8000003FE0FF8000003FE0FF8000003FE0 7F8000003FC07F8000003FC07F8000003FC07FC000007FC03FC000007F803FC000007F801FE00000FF001FE00000FF000FF0 0001FE0007F00001FC0003F80003F80001FC0007F000007F001FC000003FC07F80000007FFFC00000000FFE00000> 48 41 -4 0 51.638] 79 @dc [ 40 42 -3 0 38.189] 104 @dc [ 32 41 -4 0 38.189] 83 @dc [<00078003C00000078003C000000FC007E000000FC007E000000FC007E000001FE00FF000001FE00FF000003FF01FF800003F F01FB800003FF01FB800007F783F3C00007F383F1C0000FF383F1E0000FE1C7E0E0000FE1C7E0E0001FE1EFC0F0001FC0EFC 070001FC0EFC070003F807F8038003F807F8038007F807F803C007F003F001C007F003F001C00FE007E000E0FFFE7FFC0FFE FFFE7FFC0FFEFFFE7FFC0FFE> 48 27 -1 0 49.646] 119 @dc [<0001C000000003E000000003E000000007F000000007F00000000FF80000000FF80000000FF80000001FDC0000001FDC0000 003FDE0000003F8E0000007F8F0000007F070000007F07000000FE03800000FE03800001FC01C00001FC01C00003FC01E000 03F800E00007F800F00007F000700007F0007000FFFE03FF80FFFE03FF80FFFE03FF80> 40 27 -1 0 36.280] 118 @dc cmbx10.329 @sf [ 40 31 -2 0 40.908] 72 @dc [<0007FC0600003FFF8E0000FE01FE0003F000FE0007E0007E000FC0007E001F80007E003F00007E003F00007E007F00007E00 7E00007E007E00007E00FE003FFFE0FE003FFFE0FE00000000FE00000000FE00000000FE00000000FE000000007E00000600 7E000006007F000006003F00000E003F00000E001F80001E000FC0001E0007E0003E0003F000FE0000FE03DE00003FFF0E00 0007FC0200> 40 31 -3 0 41.097] 71 @dc [<0030018000007803C000007803C000007803C00000FC07E00000FC07E00001F60FB00001F60F300001F60F300003E31E1800 03E31E180007C1BE0C0007C1BC0C0007C1BC0C000F80F806000F80F806001F00F803001F00F00300FFE7FE1FE0FFE7FE1FE0> 40 20 -1 0 37.751] 119 @dc [<387CFEFEFE7C38> 8 7 -4 0 14.520] 46 @dc [<00FFFE00FFFE0007C00007C00007C00007C00007C00007C0FFFFFEFFFFFEE003C07003C03803C01803C00C03C00E03C00703 C00383C00183C000C3C00063C00073C0003BC0001FC0000FC00007C00007C00003C00001C0> 24 29 -1 0 26.136] 52 @dc [ 32 31 -2 0 31.438] 76 @dc [<0003FC0000001FFF8000007E03C00000F800600001F000300001F000180003E000180007E0000C0007E0000C0007E0000C00 07E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C00 07E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C0007E0000C00FFFF01FFE0 FFFF01FFE0> 40 31 -2 0 40.213] 85 @dc [<001FFFE000001FFFE0000000FC00000000FC00000000FC00000000FC00000000FC00000000FC00000000FC00000000FC0000 0000FC00000000FC00000000FC00000001FC00000001FE00000003FF00000007F30000000FE18000000FE1C000001FC0C000 003F806000003F807000007F00300000FE00180001FC001C0001FC000C0003F800060007F000070007F0000380FFFE003FF8 FFFE003FF8> 40 31 -1 0 39.519] 89 @dc [ 40 31 -2 0 39.519] 88 @dc [ 32 31 -2 0 35.731] 80 @dc [<00018000300000000380003800000003C0007800000007C0007C00000007C0007C00000007E000FC0000000FE000FE000000 0FF001FE0000000FF001FE0000001FB001FB0000001F9803F30000003F9803F38000003F1803F18000003F0C07E18000007E 0C07E0C000007E0E0FE0C000007E060FC0C00000FC060FC0600000FC031F80600001FC031F80700001F8031F80300001F801 BF00300003F001BF00180003F001FF00180003F000FE00180007E000FE000C0007E000FE000C000FE000FC000E000FC000FC 000E00FFFE0FFFC0FFE0FFFE0FFFC0FFE0> 56 31 -1 0 54.039] 87 @dc [ 40 31 -2 0 40.971] 75 @dc cmbx10.432 @sf [<003FC00000FFF00003FFFC0007E07E000FC03F001F803F801F801FC03F001FC03F001FE07F001FE07F001FE07F001FE07F00 1FE0FF001FE0FF001FE0FF001FE0FF001FC0FF801FC0FF801F80FFC03F00FFC03E00FF707C00FF3FF800FF0FC000FF000000 7F0000007F0000007F0000003F8000003F801F001F803F801FC03F800FC03F8007E03F8003F01F8001FC0F0000FFFE00003F FC000007F000> 32 39 -3 0 34.370] 54 @dc [<00000E00000700000000001F00000F80000000001F00000F80000000001F80001F80000000003F80001FC0000000003F8000 1FC0000000003FC0003FC0000000007FC0003FE0000000007FC0003FE000000000FFE0007FF000000000FFE0007FF0000000 00FFF000FFF000000001FE7000FF3800000001FE7000FF3800000001FE7801FF3800000003FC3801FE1C00000003FC3801FE 1C00000007FC1C03FC1E00000007F81C03FC0E00000007F81E07FC0E0000000FF00E07F8070000000FF00E07F8070000001F F00F0FF0078000001FE0070FF0038000001FE0070FF0038000003FE0039FE003C000003FC0039FE001C000003FC003FFE001 C000007F8001FFC000E000007F8001FFC000E00000FF8000FF8000F00000FF0000FF8000700000FF0000FF8000700001FF00 00FF0000780001FE0000FF0000380001FE0001FF0000380003FC0001FE00001C0003FC0001FE00001C00FFFFE07FFFF007FF F0FFFFE07FFFF007FFF0FFFFE07FFFF007FFF0> 72 41 -1 0 71.065] 87 @dc [ 48 41 -2 0 51.970] 65 @dc [ 40 41 -3 0 45.163] 69 @dc [ 40 41 -3 0 43.253] 70 @dc [<1C003E007F00FF80FF80FF807F003E001C00> 16 9 -5 0 19.094] 46 @dc cmti10.329 @sf [<00FF80000300F8000C000F00100001C01000000020000000403E0F004061988040C0F84041C0382081C03C2081C01C108180 1C1041C01C1041C00E0841C00E0841C00E0841C00E0820E0070820E00704107007041030070408180408040C080804061808 0201E008010000100080002000600020001800C0000603000001FC00> 32 32 -6 0 34.847] 64 @dc [<07C000183800300400700200700100F00000F00000F00000F00000F000007800007800007800003C02001C07001E07800E07 8003008001C100007E00> 24 20 -4 0 20.908] 99 @dc [<601E00E0310070310070708070708070708038384038700038700038E0001FC0001E00001D00001C80000E40C00E21E00E11 E00E08E00704200703C007000007000003800003800003800003800001C00001C00001C00001C0000FE00001E000> 24 32 -3 0 20.908] 107 @dc cmr10.329 @sf [<0F800030E000407000407800F03800F83C00F83C00F83C00203C00003C00003C00003C00003C00003C00003C00003C00003C 00003C00003C00003C00003C00003C00003C00003C00003C00003C00003C00003C00003C00003C00007C000FFFC0> 24 32 -2 1 23.358] 74 @dc cmti10.329 @sf [<3C0000630000F1800079C00030E00000E00000E000007000007000007000007000003800003800003800003800001C00001C 00001C00001C00000E00000E00000E00020E00010700010700008700008700004600003C0000000000000000000000000000 00000000000000000003800003C00003C0000180> 24 40 2 9 13.939] 106 @dc cmr10.329 @sf [ 32 31 -2 0 34.090] 72 @dc 4 @bop1 cmr10.329 @sf 224 307 p (Co) s 1 r (de) s 14 r (for) s 14 r (our) s 14 r (latest) s 14 r (sequence) s 14 r (assem) s 0 r (bly) s 13 r (program) s cmti10.329 @sf 14 r 98 c -2 r (ap) s cmr10.329 @sf 13 r (is) s 14 r (in) s 14 r (directories) s cmbx10.329 @sf 14 r (bap) s cmr10.329 @sf 224 364 p (and) s cmbx10.329 @sf 16 r (bap/osp-bits) s cmr10.329 @sf 0 r 46 c 24 r (Mak) s 0 r 101 c 15 r (the) s 16 r (ob) s 3 r (jects) s 16 r (in) s cmbx10.329 @sf 16 r (staden) s cmr10.329 @sf 17 r (\014rst,) s 16 r (then) s 17 r (the) s 16 r (ones) s 16 r (in) s cmbx10.329 @sf 224 420 p (bap/osp-bits) s cmr10.329 @sf 0 r 44 c 17 r (and) s 16 r (\014nally) s 16 r (the) s 16 r (ones) s 16 r (in) s cmbx10.329 @sf 16 r (bap) s cmr10.329 @sf 0 r 46 c 24 r (In) s cmbx10.329 @sf 16 r (ted) s cmr10.329 @sf 16 r (is) s 16 r (the) s 16 r (trace) s 16 r (editing) s 224 477 p (program.) s cmbx10.432 @sf 224 620 p 53 c 69 r (Other) s 23 r (Soft) s -1 r 119 c -2 r (are) s 22 r (Pro) s -1 r (vided) s cmr10.329 @sf 224 721 p (Other) s 13 r (soft) s 0 r 119 c -1 r (are) s 11 r (and) s 13 r (scripts) s 13 r (can) s 13 r 98 c 1 r 101 c 13 r (found) s 13 r (in) s 13 r (the) s cmbx10.329 @sf 13 r (alf) s cmr10.329 @sf 5 r 44 c cmbx10.329 @sf 13 r (abi) s cmr10.329 @sf 0 r 44 c cmbx10.329 @sf 13 r (cop) s cmr10.329 @sf 0 r 44 c cmbx10.329 @sf 14 r (getMCH) s cmr10.329 @sf 0 r 44 c cmbx10.329 @sf 224 778 p (scf) s cmr10.329 @sf 5 r 44 c cmbx10.329 @sf 17 r (frog) s cmr10.329 @sf 18 r (and) s cmbx10.329 @sf 17 r (scripts) s cmr10.329 @sf 17 r (directories.) s 25 r (Eac) s 0 r 104 c 15 r (directory) s 17 r (con) s 0 r (tains) s 16 r (do) s 1 r (cumen) s 0 r (ta-) s 224 834 p (tion) s 15 r (describing) s 15 r (the) s 16 r (programs) s 15 r (con) s -1 r (tained.) s 295 891 p (Since) s 18 r (release) s 19 r 118 c 0 r (ersion-1993.0) s 18 r 119 c -1 r 101 c 18 r (ha) s 0 r 118 c -2 r 101 c 18 r (distributed) s 19 r (the) s cmti10.329 @sf 19 r (squirr) s -2 r (el) s 19 r (\(v1.4\)) s cmr10.329 @sf 224 947 p (pac) s 0 r 107 c -3 r (age.) s 19 r (Please) s 13 r (read) s 12 r (the) s 13 r (disclaimer) s 13 r (that) s 13 r (accompanies) s 13 r (this) s 13 r (soft) s -1 r 119 c -1 r (are.) s 18 r (Ad-) s 224 1003 p (ditional) s 12 r (sources) s 12 r (and) s 12 r (scripts) s 12 r (can) s 13 r 98 c 1 r 101 c 12 r (found) s 12 r (in) s cmbx10.329 @sf 12 r (expGetSeq) s cmr10.329 @sf 0 r 44 c cmbx10.329 @sf 13 r 118 c -1 r (ep) s 1 r 101 c cmr10.329 @sf 0 r 44 c cmbx10.329 @sf 12 r (newted) s cmr10.329 @sf 224 1060 p (and) s cmbx10.329 @sf 15 r (squirrel-1.4) s cmr10.329 @sf 15 r (directories.) s 295 1116 p (Man) s -1 r 121 c 19 r (scripts) s 19 r (\(including) s cmti10.329 @sf 20 r (squirr) s -2 r (el) s cmr10.329 @sf 0 r 41 c 19 r (and) s 19 r (\014lters) s 19 r 119 c 0 r (ere) s 18 r (dev) s 0 r (elop) s 0 r (ed) s 20 r (at) s 19 r (the) s 224 1173 p (MR) s 0 r (C-LMB) s 15 r (for) s cmbx10.329 @sf 16 r (INTERNAL) s 19 r (USE) s 19 r (ONL) s -4 r 89 c cmr10.329 @sf 0 r 46 c 16 r 87 c -3 r 101 c 15 r (are) s 17 r 97 c -1 r 119 c -1 r (are) s 15 r (that) s 17 r 112 c 1 r (eople) s 224 1229 p (elsewhere) s 21 r (will) s 21 r 119 c 0 r (an) s -1 r 116 c 20 r (to) s 21 r (dev) s -1 r (elop) s 20 r (similar) s 21 r (soft) s 0 r 119 c -1 r (are.) s 37 r 87 c -3 r 101 c 20 r (include) s 21 r (them) s 21 r (in) s 224 1286 p (the) s 14 r (Staden) s 14 r 80 c -1 r (ac) s -1 r 107 c -2 r (age) s 12 r (merely) s 14 r (as) s cmbx10.329 @sf 14 r (EXAMPLES) s cmr10.329 @sf 14 r (of) s 14 r (what) s 13 r (has) s 14 r 98 c 1 r (een) s 14 r (ac) s 0 r (hiev) s -1 r (ed) s 224 1342 p (elsewhere.) s cmbx10.329 @sf 31 r (THESE) s 21 r (SCRIPTS) s 21 r (WILL) s 21 r (NOT) s 22 r 87 c -1 r (ORK) s 21 r (ON) s 21 r (YOUR) s 224 1399 p (SYSTEM) s 18 r (WITHOUT) s 17 r (MODIFICA) s -3 r (TION.) s cmbx10.432 @sf 224 1542 p 54 c 69 r (When) s 23 r (All) s 23 r (Else) s 23 r 70 c -5 r (ails...) s cmr10.329 @sf 224 1643 p (If) s 22 r 121 c 0 r (ou) s 21 r (ha) s -1 r 118 c -1 r 101 c 21 r (an) s 0 r 121 c 21 r (problems) s 21 r (please) s 22 r (con) s 0 r (tact) s 21 r (the) s 22 r (authors,) s 23 r (Ro) s 2 r (dger) s 15 r (Staden) s 224 1700 p 40 c cmti10.329 @sf 0 r (rs@mr) s -1 r (c-lmb) s -2 r (a.c) s -3 r (am.ac.uk) s 4 r 41 c cmr10.329 @sf 0 r 44 c 11 r (Simon) s 15 r (Dear) s 10 r 40 c cmti10.329 @sf 0 r (sd@mr) s -1 r (c-lmb) s -2 r (a.c) s -3 r (am.ac.uk) s 4 r 41 c cmr10.329 @sf 10 r (and) s 11 r (James) s 15 r 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