The staden suite of sequence analysis programs for the SUN/X11 -------------------------------------------------------------- The contents of this directory should be (at least): bin executable sequence analysis programs help helpfiles used by these programs staden.l manual page staden.login csh initialisations staden.profile sh initialisations tables tables used by the programs Installers should first print out a copy of the manual page. This describes the current state of the software and how to invoke the initialisations. The manual page should be placed somewhere where `man' can find it. The directory structure should be position independent. It's location, however, must be encoded in the environment variable $STADENROOT. This is described in the man page. xdap - Sequence assembly program -------------------------------- This is the source directory for the dap and xdap sequence assembly programmes, and convert_project. As well as the sources you should find a makefile and a default resources file "Xdap". The "xdap" application can be constructed by simply typing "make xdap", and installed by typing "make installx" As xdap requires objects from the "staden" and "ted" directories, it should be made after the staden package proper and the trace editor have been made. The default X resource file "Xdap" files is found in $STADENROOT/tables, and the environment variable XFILESEARCHPATH is set in staden.login to refer to it. This file could also be placed in the "/usr/lib/X11/app-defaults" directory.