-1 0 23 2 T General -1 0 23 2 X General -2 0 53 2 T Screen control -2 0 53 2 X Screen control -3 0 89 2 T Statistical analysis -3 0 89 2 X Statistical analysis -1 0 112 2 T General -1 0 112 2 X General -2 0 142 2 T Screen control -2 0 142 2 X Screen control -3 0 178 2 T Statistical analysis -3 0 178 2 X Statistical analysis 0 -1 198 2 T NIPF 0 -1 198 2 X NIPF 1 1 217 2 T Help 1 1 217 2 X Help 2 1 236 2 T Quit 2 1 236 2 X Quit 3 1 268 2 T Read new sequence 3 1 268 2 X Read new sequence 4 1 305 2 T Redefine active region 4 1 305 2 X Redefine active region 5 1 337 2 T List the sequence 5 1 337 2 X List the sequence 6 1 368 2 T List a text file 6 1 368 2 X List a text file 7 1 404 2 T Direct output to disk 7 1 404 2 X Direct output to disk 8 1 448 2 T Write active sequence to disk 8 1 448 2 X Write active sequence to disk 9 1 481 2 T List a translation 9 1 481 2 X List a translation 32 1 525 2 T List showing base differences 32 1 525 2 X List showing base differences 37 1 564 2 T List showing translation 37 1 564 2 X List showing translation 33 1 614 2 T List showing amino acid differences 33 1 614 2 X List showing amino acid differences 10 2 643 2 T Clear graphics 10 2 643 2 X Clear graphics 11 2 668 2 T Clear text 11 2 668 2 X Clear text 12 2 695 2 T Draw a ruler 12 2 695 2 X Draw a ruler 13 2 724 2 T Use cross hair 13 2 724 2 X Use cross hair 14 2 752 2 T Reset margins 14 2 752 2 X Reset margins 15 2 780 2 T Label diagram 15 2 780 2 X Label diagram 16 2 808 2 T Display a map 16 2 808 2 X Display a map 17 3 842 2 T Set comparison mode 17 3 842 2 X Set comparison mode 18 3 870 2 T Set sort mode 18 3 870 2 X Set sort mode 21 3 903 2 T Count base changes 21 3 903 2 X Count base changes 22 3 937 2 T Count codon changes 22 3 937 2 X Count codon changes 23 3 972 2 T Count genetic events 23 3 972 2 X Count genetic events 24 3 1013 2 T Show table of base changes 24 3 1013 2 X Show table of base changes 36 3 1064 2 T Show table of expressed base changes 36 3 1064 2 X Show table of expressed base changes 39 3 1112 2 T Show table of silent base changes 39 3 1112 2 X Show table of silent base changes 38 3 1149 2 T Estimate mutation rate 38 3 1149 2 X Estimate mutation rate 25 3 1181 2 T Plot base changes 25 3 1181 2 X Plot base changes 26 3 1227 2 T Plot expressed changes per base 26 3 1227 2 X Plot expressed changes per base 27 3 1270 2 T Plot silent changes per base 27 3 1270 2 X Plot silent changes per base 28 3 1317 2 T Count expressed changes per base 28 3 1317 2 X Count expressed changes per base 29 3 1361 2 T Count silent changes per base 29 3 1361 2 X Count silent changes per base 30 3 1401 2 T Count changed amino acids 30 3 1401 2 X Count changed amino acids 31 3 1443 2 T Plot amino acid variability 31 3 1443 2 X Plot amino acid variability