add: current readme

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kuoi 2023-04-14 02:56:17 +08:00
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# STADEN-LG
STADEN Last Generation
## Introduction
This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely.
## Build
You should clone this repo and cd to the repo get the `$pkgname` via `pwd`
```
# build easy
for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits
do
cd $pkgname/src/$pkgalone
make
done
# compile x related
cd $pkgname/src/staden
bash gen_a.sh
make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap
cd $pkgname/src/bap
make bap xbap
for pkgalone in vepe update_subclones scf
do
cd $pkgname/src/$pkgalone
make
done
```
Or you can get this pkg from BioArchLinux repo.
## Todo
Following pkgs need your hands.
- [ ] nip
- [ ] sip
- [ ] rep
- [ ] lip
- [ ] vep
- [ ] nipl
- [ ] pipl
- [ ] sipl
- [ ] xnip
- [ ] xpip
- [ ] xsip
## License
- Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License.
- Copyright (c) 2023~ Everyone. GPL License.