Guide to this directory                Simon Dear, 3 December 1991
------------------------------------------------------------------

In this directory there are all the sources required to make COP, plus
documentation.

COP.GUIDE

	Guide to the design and use of cop

makefile

	Makefile for cop.

cop.c

	Main program module.

misc.c misc.h

	Useful everyday routines.

xdap_db.c xdap_db.h

	Routines to read xdap databases.

getSeq.c fpoint.c fpoint.h opp.c opp.h seq.c seq.h seqIOABI.c
seqIOABI.h seqIOALF.c seqIOALF.h seqIOEdit.h seqIOPlain.c
seqIOPlain.h mystdlib.h

	Routines to read in trace files. Taken from ted.

align.c llin.c llin.h uascii.gbl upam.gbl
	
	Alignment routines. Taken from fasta.
