64 lines
1.9 KiB
Plaintext
64 lines
1.9 KiB
Plaintext
$!
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$!VAX-VMS cc make file for readseq
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$!
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$ echo := write sys$output
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$ if p1.eqs."TEST" then goto tests
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$
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$ echo "compiling readseq..."
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$ cc readseq, ureadseq
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$!
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$ echo "linking readseq..."
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$ link readseq, ureadseq, sys$library:vaxcrtl/lib
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$!
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$tests:
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$!
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$ echo "defining readseq symbol:"
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$ dd = f$environment("default")
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$ readseq :== $ 'dd'readseq.exe
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$ show symbol readseq
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$!
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$ echo ""
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$ echo "test for general read/write of all chars:"
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$ readseq -p alphabet.std -otest.alpha
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$ diff test.alpha alphabet.std
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$!
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$ echo ""
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$ echo "test for valid format conversions"
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$!
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$ readseq -v -p -f=ig nucleic.std -otest.ig
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$ readseq -v -p -f=gb test.ig -otest.gb
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$ readseq -v -p -f=nbrf test.gb -otest.nbrf
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$ readseq -v -p -f=embl test.nbrf -otest.embl
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$ readseq -v -p -f=gcg test.embl -otest.gcg
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$ readseq -v -p -f=strider test.gcg -otest.strider
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$ readseq -v -p -f=fitch test.strider -otest.fitch
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$ readseq -v -p -f=fasta test.fitch -otest.fasta
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$ readseq -v -p -f=pir test.fasta -otest.pir
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$ readseq -v -p -f=ig test.pir -otest.ig-b
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$ diff test.ig test.ig-b
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$!
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$ echo ""
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$ echo "Test for multiple-sequence format conversions:"
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$ readseq -p -f=ig multi.std -otest.m-ig
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$ readseq -p -f=gb test.m-ig -otest.m-gb
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$ readseq -p -f=nbrf test.m-gb -otest.m-nbrf
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$ readseq -p -f=embl test.m-nbrf -otest.m-embl
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$ readseq -p -f=fasta test.m-embl -otest.m-fasta
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$ readseq -p -f=pir test.m-fasta -otest.m-pir
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$ readseq -p -f=msf test.m-pir -otest.m-msf
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$ readseq -p -f=paup test.m-msf -otest.m-paup
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$ readseq -p -f=ig test.m-paup -otest.m-ig-b
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$ diff test.m-ig test.m-ig-b
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$ echo ""
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$ echo "Expect differences in the header lines due to"
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$ echo "different format headers. If any sequence lines"
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$ echo "differ, or if checksums differ, there is a problem."
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$!
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$! #cleanup
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$! delete test.*;
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$ echo "-----------"
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$ echo ""
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$ echo "To clean up test files, command me:
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$ echo " DELETE test.*;"
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$!
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